H3K27ac Signal Track for MSLCL
收藏DataCite Commons2020-08-25 更新2024-08-17 收录
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https://figshare.com/articles/H3K27ac_Signal_Track_for_MSLCL/12442721/1
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Genome-wide signal tracks for each sample were generated in two stages: (i) assess ChIP–seq quality and obtain the predominant fragment length using phantompeakqualtools (https://code.google.com/archive/p/phantompeakqualtools/); (ii) use align2rawsignal (https://code.google.com/archive/p/align2rawsignal/wikis/Method.wiki) to generate signal track (parameters: -n = 5, -k = epanechnikov, -l = [frag-ment length from step (i)], -w = 150, -f = 0).
所有样本的全基因组信号轨道(genome-wide signal tracks)通过两个阶段生成:
(i)利用phantompeakqualtools工具评估染色质免疫共沉淀测序(ChIP-seq)的质量,并获取优势片段长度,该工具的访问地址为https://code.google.com/archive/p/phantompeakqualtools/;
(ii)使用align2rawsignal工具生成信号轨道,所用参数为:-n = 5、-k = Epanechnikov核函数、-l = [步骤(i)得到的片段长度]、-w = 150、-f = 0,该工具的方法文档网址为https://code.google.com/archive/p/align2rawsignal/wikis/Method.wiki。
提供机构:
figshare
创建时间:
2020-06-06



