five

FASTA files for primate species

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DataCite Commons2025-03-18 更新2025-05-07 收录
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https://figshare.com/articles/dataset/FASTA_files_for_primate_species/28613381/1
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Aligned nucleotide sequences for primate species. Coding sequences were obtained by tBlastN search on Ensembl for the following primate species: Crab eating macaque<i> (Macaca fascicularis), </i>White faced capuchin <i>(Cebus imitator), </i>White tufted marmoset <i>(Callithrix jacchus), </i>Ma’s night monkey <i>(Aotus nancymaae), </i>Gibbon <i>(Hylobatidae), </i>Bamboo lemur <i>(Hapalemur griseus), </i>Sooty mangabey <i>(Cercocebus atys)</i>, Olive baboon <i>(Papio anubis)</i>, Gelada <i>(Theropithecus gelada),</i> and Mouse lemur <i>(Microcebus danfossi)</i> against the TLR7 in humans. The coding sequence for the rat <i>(Rattus norvegicus</i><i>) </i>was also obtained and served as the outgroup<i>.</i> All CDS sequences were aligned using MUSCLE in AliView software. <br>

灵长类物种的比对核苷酸序列。编码序列通过在Ensembl上使用tBlastN搜索获得,涉及的灵长类物种包括:食蟹猕猴<i>(Macaca fascicularis)、</i>白脸卷尾猴<i>(Cebus imitator)、</i>白耳狨猴<i>(Callithrix jacchus)、</i>马氏夜猴<i>(Aotus nancymaae)、</i>长臂猿<i>(Hylobatidae)、</i>竹狐猴<i>(Hapalemur griseus)、</i>黑长尾猴<i>(Cercocebus atys)</i>、东非狒狒<i>(Papio anubis)</i>、狮尾狒<i>(Theropithecus gelada)</i>和鼠狐猴<i>(Microcebus danfossi)</i>,搜索时以人类TLR7基因为参考序列。同时获取了大鼠<i>(Rattus norvegicus)</i>的编码序列,并将其作为外群。所有CDS序列均通过AliView软件中的MUSCLE工具进行比对。<br>
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figshare
创建时间:
2025-03-18
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