Timema genome sequences and annotations. Version 8.

Genome sequence (fasta) files and annotation (gff) files for ten Timema species: T. bartmani, T. cristinae, T. poppensis, T. californicum,  T. podura, T. tahoe, T. monikensis, T. douglasi, T. shepardi, and  T. genevievae.

Species are abbreviated as follows: Tbi = T. bartmani, Tce = T. cristinae, Tps = T. poppensis, Tcm = T. californicum, Tpa = T. podura, Tte = T. tahoe, Tms = T. monikensis, Tdi = T. douglasi, Tsi = T. shepardi, and Tge = T. genevievae

For details of assembly and annotation see: 

Jaron, K. S*., Parker, D. J*., Anselmetti, Y., Tran Van, P. T., Bast, J., Dumas,  Z., Figuet, E., François, C. M., Hayward, K., Rossier, V., Simion, P., Robinson-Rechavi,  M., Galtier, N., Schwander, T. 2021. Convergent consequences of parthenogenesis on stick insect genomes. bioRxiv. doi: https://doi.org/10.1101/2020.11.20.391540

File list:

Tbi_b3v08.fasta = T. bartmani genome sequence file
Tbi_b3v08.max_arth_b2g_droso_b2g.gff = T. bartmani genome annotation file
Tce_b3v08.fasta = T. cristinae genome sequence file
Tce_b3v08.max_arth_b2g_droso_b2g.gff = T. cristinae genome annotation file
Tcm_b3v08.fasta     = T. bartmani genome sequence file
Tcm_b3v08.max_arth_b2g_droso_b2g.gff = T. californicum genome annotation file
Tdi_b3v08.fasta = T. douglasi genome sequence file
Tdi_b3v08.max_arth_b2g_droso_b2g.gff = T. douglasi genome annotation file
Tge_b3v08.fasta = T. genevievae genome sequence file
Tge_b3v08.max_arth_b2g_droso_b2g.gff = T. genevievae genome annotation file
Tms_b3v08.fasta = T. monikensis genome sequence file
Tms_b3v08.max_arth_b2g_droso_b2g.gff = T. monikensis genome annotation file
Tpa_b3v08.fasta = T. podura genome sequence file
Tpa_b3v08.max_arth_b2g_droso_b2g.gff = T. podura genome annotation file
Tps_b3v08.fasta = T. poppensis genome sequence file
Tps_b3v08.max_arth_b2g_droso_b2g.gff = T. poppensis genome annotation file
Tsi_b3v08.fasta = T. shepardi genome sequence file
Tsi_b3v08.max_arth_b2g_droso_b2g.gff = T. shepardi genome annotation file
Tte_b3v08.fasta     = T. tahoe genome sequence file
Tte_b3v08.max_arth_b2g_droso_b2g.gff = T. tahoe genome annotation file

本数据集包含10种Timema属竹节虫的基因组序列FASTA格式（FASTA）文件与注释GFF格式（GFF）文件，涉及物种依次为：T. bartmani、T. cristinae、T. poppensis、T. californicum、T. podura、T. tahoe、T. monikensis、T. douglasi、T. shepardi以及T. genevievae。

各物种的缩写规则如下：Tbi对应T. bartmani，Tce对应T. cristinae，Tps对应T. poppensis，Tcm对应T. californicum，Tpa对应T. podura，Tte对应T. tahoe，Tms对应T. monikensis，Tdi对应T. douglasi，Tsi对应T. shepardi，Tge对应T. genevievae。

如需了解基因组组装与注释的详细方法，请参阅以下文献：
Jaron, K. S*., Parker, D. J*., Anselmetti, Y., Tran Van, P. T., Bast, J., Dumas, Z., Figuet, E., François, C. M., Hayward, K., Rossier, V., Simion, P., Robinson-Rechavi, M., Galtier, N., Schwander, T. 2021. 孤雌生殖对竹节虫基因组的趋同演化效应. bioRxiv. doi: https://doi.org/10.1101/2020.11.20.391540

数据集文件清单如下：
Tbi_b3v08.fasta：T. bartmani基因组序列文件
Tbi_b3v08.max_arth_b2g_droso_b2g.gff：T. bartmani基因组注释文件
Tce_b3v08.fasta：T. cristinae基因组序列文件
Tce_b3v08.max_arth_b2g_droso_b2g.gff：T. cristinae基因组注释文件
Tcm_b3v08.fasta：T. bartmani基因组序列文件
Tcm_b3v08.max_arth_b2g_droso_b2g.gff：T. californicum基因组注释文件
Tdi_b3v08.fasta：T. douglasi基因组序列文件
Tdi_b3v08.max_arth_b2g_droso_b2g.gff：T. douglasi基因组注释文件
Tge_b3v08.fasta：T. genevievae基因组序列文件
Tge_b3v08.max_arth_b2g_droso_b2g.gff：T. genevievae基因组注释文件
Tms_b3v08.fasta：T. monikensis基因组序列文件
Tms_b3v08.max_arth_b2g_droso_b2g.gff：T. monikensis基因组注释文件
Tpa_b3v08.fasta：T. podura基因组序列文件
Tpa_b3v08.max_arth_b2g_droso_b2g.gff：T. podura基因组注释文件
Tps_b3v08.fasta：T. poppensis基因组序列文件
Tps_b3v08.max_arth_b2g_droso_b2g.gff：T. poppensis基因组注释文件
Tsi_b3v08.fasta：T. shepardi基因组序列文件
Tsi_b3v08.max_arth_b2g_droso_b2g.gff：T. shepardi基因组注释文件
Tte_b3v08.fasta：T. tahoe基因组序列文件
Tte_b3v08.max_arth_b2g_droso_b2g.gff：T. tahoe基因组注释文件