Genomic data of Nanmaohu Park vascular plant specimen, RL0739
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http://gigadb.org/dataset/101802
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We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002229. Preliminary identification is that it is of the family Brassaiopsis hainla. <br>The K-mer distribution of the sequencing predicted the genome size to be 6846210000bp. We have generated 67480000000bp of data, which gives a theoretical coverage of 9.9x.
本研究从中国云南省瑞丽植物园采集维管植物 (vascular plants) 样本。所有样本的采集区域地理坐标为东经97.646389°至98.099167°、北纬23.878333°至24.155556°,海拔范围为740米至1200米。本次研究共采集1093份维管植物样本,以幼叶作为测序材料,同步制作凭证标本。所有凭证标本均保存于国家基因库标本馆(Herbarium of China National GeneBank,简称HCNGB)。
其中761份标本的DNA满足测序要求,剩余332份样本均已制作凭证标本,对应植物的影像资料已收录于本数据集。该761份样本涵盖49个目、137个科,共计689种维管植物。
目前研究团队仍在推进所有标本的正式分类鉴定工作,但截至论文发表时,仅极少数标本被鉴定至科以上分类阶元。
本数据集包含编号为HCNGB:RUILI:HCNGB_00002229的凭证标本对应的基因组数据与影像资料,其初步分类鉴定结果为Brassaiopsis hainla。
基于测序获得的K-mer分布特征,预测该样本的基因组大小为6846210000bp;本次研究共生成67480000000bp的测序数据,理论测序覆盖度达9.9×。
提供机构:
GigaScience Database
创建时间:
2019-01-24



