Data and code from: Addressing widespread detection heterogeneity in avian occupancy modeling using passive acoustic surveys

This repository includes 90 simulated avian monitoring datasets, each consisting of data for 160 occupied sites, as well as the results of field PAM surveys for American woodcock (Scolopax minor), Wood Thrush (Hylocichla mustelina), and Eastern Whip-poor-will (Antrostomus vociferus).  We used three occupancy modeling approaches (single-season static occupancy models, the Royle-Nichols abundance model, and zero-inflated beta-binomial models) to estimate occupancy in each dataset. We include model fitting results for each monitoring dataset under a variety of surveying intensities (i.e., subset to a varying number of visits to each site) and, for the simulated data, varying underlying occupancy rates (i.e., 20 %, 50 %, or 80 % occupancy for the simulated data). This repository also includes the scripts used to generate simulated data, fit models, and generate the figures for the main manuscript and the supplemental information. These data and scripts can be used to investigate t..., , # Data and code from: Addressing widespread detection heterogeneity in avian occupancy modeling using passive acoustic surveys

Dataset DOI: [10.5061/dryad.djh9w0wdr](https://doi.org/10.5061/dryad.djh9w0wdr)

## Description of the data and file structure

This repository includes data, results, and code for the manuscript \"Addressing widespread detection heterogeneity in avian occupancy modeling using passive acoustic surveys.\"

In particular, this repository includes simulated data, field data, occupancy model fitting results, and results of tests for detection heterogeneity and goodness-of-fit. It also includes the R scripts needed to reproduce the analysis.

### Files and variables

### Data files

#### File: data_sims.zip

**Description:** Simulated bird detection histories for effective detection radius (tau) = 60 m, as analyzed in the main body of the manuscript.

**Files:**

* `sims/scenario_names.RDS` (list): scenario names used when generating and analyzing simulations, e.g., d...,

本仓库包含90个模拟鸟类监测数据集，每个数据集涵盖160个被占用站点的数据，以及美国丘鹬（American woodcock，Scolopax minor）、林鸫（Wood Thrush，Hylocichla mustelina）和东夜鹰（Eastern Whip-poor-will，Antrostomus vociferus）的野外被动声学监测（passive acoustic monitoring, PAM）调查结果。我们采用三种占据模型（occupancy modeling）方法——单季节静态占据模型（single-season static occupancy models）、Royle-Nichols丰度模型（Royle-Nichols abundance model）和零膨胀贝塔二项模型（zero-inflated beta-binomial models）——来估计每个数据集的占据率（occupancy）。我们提供了各监测数据集在不同调查强度（即每个站点的访问次数不同）下的模型拟合结果，以及模拟数据在不同潜在占据率（即模拟数据的占据率为20%、50%或80%）下的结果。本仓库还包含用于生成模拟数据、拟合模型以及生成主论文和补充信息图表的脚本。这些数据和脚本可用于研究...，# 数据与代码来源：利用被动声学监测解决鸟类占据模型中广泛存在的检测异质性

数据集DOI：[10.5061/dryad.djh9w0wdr](https://doi.org/10.5061/dryad.djh9w0wdr)

## 数据与文件结构描述

本仓库包含主论文《利用被动声学监测解决鸟类占据模型中广泛存在的检测异质性》的相关数据、结果和代码。

具体而言，本仓库包含模拟数据、野外数据、占据模型拟合结果，以及检测异质性和拟合优度的测试结果。还包含重现分析所需的R脚本。

### 文件与变量

### 数据文件

#### 文件：data_sims.zip

**描述：** 如主论文主体部分所述，有效检测半径（effective detection radius, tau）=60米的模拟鸟类检测历史数据。

**文件列表：**

* `sims/scenario_names.RDS`（列表）：生成和分析模拟时使用的场景名称，例如d...