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Additional file 9: of Relationships between putative G-quadruplex-forming sequences, RecQ helicases, and transcription

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Figshare2016-12-16 更新2026-04-08 收录
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https://springernature.figshare.com/articles/dataset/Additional_file_9_of_Relationships_between_putative_G-quadruplex-forming_sequences_RecQ_helicases_and_transcription/4467299/1
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资源简介:
R code for extracting DNAse 1 genomic track signal near TSS for epigenetic modeling of gene expression method. Program written in R that calculates DNAse track signal in 100 bp bins spanning 1 kbp upstream and downstream of the TSS. Takes .bigwig file of DNAse 1 hypersesitivity epigenomic track and output of Additional file 8 as input. (R 4 kb)

用于基因表达方法表观遗传建模、提取转录起始位点(Transcription Start Site, TSS)附近脱氧核糖核酸酶1(DNAse 1)基因组轨道信号的R代码。本程序采用R语言编写,可在转录起始位点上下游各1千碱基对(kbp)的区间内,以100碱基对(bp)为分箱单位计算DNAse轨道信号。程序输入为脱氧核糖核酸酶1超敏表观基因组轨道的BigWig(.bigwig)格式文件,以及附加文件8的输出结果。(R 4 KB)
提供机构:
L. Maher
创建时间:
2016-12-16
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