Dataset supporting "SEgene identifies links between super enhancers and gene expression across cell types"

Processed RNA-seq &amp; ChIP-seq dataset as analyzed in the paper “SEgene identifies links between super enhancers and gene expression across cell types” (npj Systems Biology &amp; Applications, 2025; DOI: 10.1038/s41540-025-00533-x). This dataset can be used to reproduce relevant analyses from the paper and/or to test the associated SEgene software.<b>Relate Code:</b>https://github.com/hamamoto-lab/SEgene<b>Original Data Source:</b>This dataset is derived from the public dataset GSE156614, available at NCBI GEO.<b>How to Cite:</b>When using this data, please cite both the original paper and this Figshare dataset:1. <b>Original Paper:</b> Shinkai N., Asada K., Machino H., Takasawa K., Takahashi S., Kouno N., Komatsu M., Hamamoto R. &amp; Kaneko S. (2025). SEgene identifies links between super enhancers and gene expression across cell types. npj Systems Biology and Applications. DOI: 10.1038/s41540-025-00533-x2. <b>This Figshare Dataset:</b> Please use the citation automatically generated by Figshare for this record (DOI: 10.6084/m9.figshare.28171127). This can typically be found on the dataset's Figshare page.

经过处理的RNA测序（RNA-seq）与染色质免疫沉淀测序（ChIP-seq）数据集，对应发表于《npj系统生物学与应用》（npj Systems Biology & Applications）2025年的论文《SEgene可识别不同细胞类型中超级增强子（super enhancers）与基因表达之间的关联》（DOI: 10.1038/s41540-025-00533-x）中的分析数据集。本数据集可用于复现该论文中的相关分析，或用于测试配套的SEgene软件。
<b>关联代码：</b>https://github.com/hamamoto-lab/SEgene
<b>原始数据源：</b>本数据集源自公开数据集GSE156614，可于NCBI基因表达综合数据库（NCBI GEO）获取。
<b>引用方式：</b>使用本数据集时，请同时引用原论文与本Figshare数据集：
1. <b>原论文：</b>Shinkai N., Asada K., Machino H., Takasawa K., Takahashi S., Kouno N., Komatsu M., Hamamoto R. & Kaneko S. (2025). SEgene identifies links between super enhancers and gene expression across cell types. npj Systems Biology and Applications. DOI: 10.1038/s41540-025-00533-x
2. <b>本Figshare数据集：</b>请使用Figshare为本记录自动生成的引用格式（DOI: 10.6084/m9.figshare.28171127），该引用通常可在本数据集的Figshare页面获取。