five

Additional file 5: of De novo transcriptome assembly of the grapevine phylloxera allows identification of genes differentially expressed between leaf- and root-feeding forms

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Figshare2016-12-15 更新2026-04-08 收录
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https://springernature.figshare.com/articles/dataset/Additional_file_5_of___De_novo_transcriptome_assembly_of_the_grapevine_phylloxera_allows_identification_of_genes_differentially_expressed_between_leaf-_and_root-feeding_forms/4452488/1
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资源简介:
Expression statistics and annotation information for each contig. Contig name, size (in bp), raw number of reads for each library (GA1, GA2, RA1, RA2), GO annotation (first line of the BLAST2GO output), blastx on nr (accession of the first hit, percent of identity, description), OMCL clustering in the pairwise comparison with the pea aphid genome (number of genes in the gene family, number of species, number of pea aphid genes and number of phylloxera genes). (ODS 4225 kb)

本数据集包含各序列重叠群(contig)的表达统计数据与注释信息,具体涵盖:序列重叠群名称、序列长度(单位:碱基对(bp))、各文库(GA1、GA2、RA1、RA2)的原始测序读段数;基因本体(Gene Ontology,GO)注释(即BLAST2GO输出结果的首行内容);针对nr数据库的blastx比对结果(首条匹配序列的登录号、序列一致性百分比、功能描述);与豌豆蚜虫基因组开展成对比较后的OMCL聚类分析结果(含基因家族包含的基因总数、参与聚类的物种数、豌豆蚜虫基因数以及根瘤蚜基因数)。本数据集为ODS格式,大小为4225千字节(kb)。
提供机构:
GaÍl Le Trionnaire; FrançOis Delmotte
创建时间:
2016-12-15
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