MM_processed_files_build39.zip

Processed MegaMUGA SNP genotype data on the Collaborative Cross founders, useful for preparing Diversity Outbred mouse genotypes for use with R/qtl2 (http://kbroman.org/qtl2). <br> Equivalent to https://doi.org/10.6084/m9.figshare.5404750.v2 but with physical and genetic map files revised for mouse build GRCm39 <br> MM_allelecodes.csv: allele codes used for all SNPs MM_foundergeno*.csv: consensus genotypes for each of the 8 founder lines MM_gmap*.csv: Genetic map positions of the SNPs MM_info.csv: marker, chr, Mbp position, cM position, and tier MM_pmap*.csv: Physical map positions (in Mbp) of the SNPs

本数据集为已处理的协作杂交（Collaborative Cross）亲本小鼠的MegaMUGA单核苷酸多态性（Single Nucleotide Polymorphism, SNP）基因型数据，可用于制备多样性远交（Diversity Outbred）小鼠基因型数据以配合R/qtl2工具包使用（http://kbroman.org/qtl2）。
该数据集等价于https://doi.org/10.6084/m9.figshare.5404750.v2 公开的数据集，但针对小鼠参考基因组版本GRCm39修订了物理图谱与遗传图谱文件。
MM_allelecodes.csv：涵盖所有单核苷酸多态性位点的等位基因编码表
MM_foundergeno*.csv：8个亲本品系的共识基因型文件
MM_gmap*.csv：单核苷酸多态性位点的遗传图谱位置（单位：厘摩cM）
MM_info.csv：包含标记名称、染色体（chr）编号、百万碱基对（Mbp）物理位置、厘摩（cM）遗传位置及分级信息的文件
MM_pmap*.csv：单核苷酸多态性位点的物理图谱位置（单位：百万碱基对Mbp）