Pseudomonas sp. LAMO17WK12:I1. Pseudomonas sp. LAMO17WK12:I1

This is a reference bacterial genome from a study to characterize how plant host genes affect the microbiome community assemblage and how the microbiome influences plant phenotypes, such as drought or salt tolerance, nutrient use, productivity, pathogen resistance, and yield. Plant-associated metagenomes are being characterized by 16S ribotyping, metagenome and reference genome sequencing and metatranscriptome sequencing. Experimental systems used to characterize the interplay between host and associated communities in different plant types have been chosen to be relevant to energy and environmental concerns, for example, Arabidopsis as a model, corn, and a key biofuel crop (Miscanthus).

本数据集为一项研究的参考细菌基因组，该研究旨在解析植物宿主基因如何调控微生物组群落组装，以及微生物组如何影响植物表型——包括抗旱性、耐盐性、养分利用效率、生产力、病原抗性与籽粒产量。针对植物关联宏基因组（metagenome），研究正通过16S核糖体分型（16S ribotyping）、宏基因组测序、参考基因组测序以及宏转录组（metatranscriptome）测序完成表征。为解析不同植物类型中宿主与关联群落的互作关系，研究选取的实验体系均与能源及环境议题相关，例如模式植物拟南芥（Arabidopsis）、玉米，以及重要的生物能源作物芒草（Miscanthus）。