MOESM2 of Transcriptomic analysis of monocytes from HIV-positive men on antiretroviral therapy reveals effects of tobacco smoking on interferon and stress response systems associated with depressive symptoms

Additional file 2: Table S1. Fold-changes for all expressed probes: HIV+ TS+ vs. HIV- TS- limma model A. Table S2. Enriched gene ontology (GO) terms and associated genes: HIV+ TS+ vs. HIV- TS-. Table S3. Fold-changes for all expressed probes: HIV+ TS+ vs. HIV+ TS- limma model B. Table S4. Enriched gene ontology (GO) terms and associated genes: HIV+ TS+ vs. HIV+ TS-. Table S5. Fold-changes for all expressed probes: HIV+ TS- vs. HIV+ TS- limma model C. Table S6. Enriched gene ontology (GO) terms and associated genes: HIV+ TS- vs. HIV+ TS-. Table S7. Fold-changes for all expressed probes: HIV+ (HIV viral load ≤200) TS+ vs. HIV- TS- limma model for sensitivity analysis. Table S8. Enriched gene ontology (GO) terms and associated genes: HIV+ (HIV viral load ≤200) TS+ vs. HIV- TS-. Table S9. Fold-changes for all expressed probes: HIV+ (HIV viral load ≤200) TS+ vs. HIV+ (HIV viral load ≤200) TS- limma model for sensitivity analysis. Table S10. Enriched gene ontology (GO) terms and associated genes: HIV+ (HIV viral load ≤200) TS+ vs. HIV+ (HIV viral load ≤200) TS-.

附加文件2：表S1。所有表达探针的倍数变化：HIV阳性TS阳性与HIV阴性TS阴性样本的limma模型A。表S2。富集的基因本体（Gene Ontology，GO）术语及相关基因：HIV阳性TS阳性与HIV阴性TS阴性样本。表S3。所有表达探针的倍数变化：HIV阳性TS阳性与HIV阳性TS阴性样本的limma模型B。表S4。富集的基因本体（GO）术语及相关基因：HIV阳性TS阳性与HIV阳性TS阴性样本。表S5。所有表达探针的倍数变化：HIV阳性TS阴性与HIV阳性TS阴性样本的limma模型C。表S6。富集的基因本体（GO）术语及相关基因：HIV阳性TS阴性与HIV阳性TS阴性样本。表S7。所有表达探针的倍数变化：HIV病毒载量≤200的HIV阳性TS阳性样本与HIV阴性TS阴性样本的敏感性分析用limma模型。表S8。富集的基因本体（GO）术语及相关基因：HIV病毒载量≤200的HIV阳性TS阳性样本与HIV阴性TS阴性样本。表S9。所有表达探针的倍数变化：HIV病毒载量≤200的HIV阳性TS阳性样本与HIV病毒载量≤200的HIV阳性TS阴性样本的敏感性分析用limma模型。表S10。富集的基因本体（GO）术语及相关基因：HIV病毒载量≤200的HIV阳性TS阳性样本与HIV病毒载量≤200的HIV阳性TS阴性样本。