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All-(heavy)-atom distances between top 20 most strongly correlated intra-protein as identified by mutual information.

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Figshare2015-12-03 更新2026-04-29 收录
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Listed are the smallest atom-atom distances (only heavy atoms, excluding side chains) for the most strongly correlated pairs of residues from the three regions PR-PR, Gag-PR, Gag-Gag ranked by MI in representative structures. For structures with multiple chains, inter-chain distances were computed and the chain and atom combinations of the smallest calculated distance for each pair are listed.aMA: matrix monomer, PDB 2H3F; MA3: matrix trimer, PDB 1HIW; CA: capsid monomer, PDB 3MGE; CA2: capsid dimer, PDB 2M8L; CA5: capsid pentamer, PDB 3P05; CA6: capsid hexamer, PDB 3MGE; NC: nucleocapsid monomer, PDB 2EXF; PR2: protease dimer, PDB 1ODW.bFor PDB files with multiple structural models, the model number with the smallest atom-atom distance is listed.All-(heavy)-atom distances between top 20 most strongly correlated intra-protein as identified by mutual information.

本数据集列出了代表性结构中,按互信息(Mutual Information)排序的三个区域(PR-PR、Gag-PR、Gag-Gag)内相关性最强的残基对的最小原子间距离(仅统计重原子,且排除侧链)。对于包含多条多肽链的结构,已计算其链间距离,并列出每对残基对应的最小计算距离的链与原子组合。 注a:MA为基质单体(matrix monomer),对应蛋白质数据库(Protein Data Bank,PDB)条目2H3F;MA3为基质三聚体,对应PDB条目1HIW;CA为衣壳单体,对应PDB条目3MGE;CA2为衣壳二聚体,对应PDB条目2M8L;CA5为衣壳五聚体,对应PDB条目3P05;CA6为衣壳六聚体,对应PDB条目3MGE;NC为核衣壳单体,对应PDB条目2EXF;PR2为蛋白酶二聚体,对应PDB条目1ODW。 注b:对于包含多个结构模型的PDB文件,已列出原子间距离最小的结构模型编号。 本数据集包含通过互信息识别出的前20个蛋白内最强相关残基对之间的全重原子距离。
创建时间:
2015-12-03
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