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MassiveFold data for target H1213 - T256

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DataCite Commons2025-05-15 更新2025-05-18 收录
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https://entrepot.recherche.data.gouv.fr/citation?persistentId=doi:10.57745/7UWNBM
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资源简介:
MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/) - `CAPRI_assessment.csv` file contains the CAPRI assessment for the target (from https://www.capri-docking.org/assessment/) - `CAPRI_scoring.pdb.gz` is a multi-pdbs containing all the MassiveFold predictions for the target. It was used for the CAPRI scoring phase.

为CASP16生成的MassiveFold数据集,系与CAPRI合作完成。针对目标生成了8040个预测结果,对应1005×8组参数。 - 关于实验设置的描述可参见`MassiveFold_CASP16_Abstract.pdf`文件 - `README.txt`文件描述了主文件`MassiveFold.tar.gz`的内容 - 主文件`MassiveFold.tar.gz`包含所有预测结果,按实验条件划分为8个文件夹;其中包含预测结果、pickle文件、序列比对、排名及图表等内容,其具体信息可参见README.txt文件 - `only_pdbs_MassiveFold.tar.gz`是`gather_runs.py`脚本的输出结果,不含pickle文件,包含所有pdb文件列表及带分数的排名文件 - `gather_runs.py`脚本用于汇总运行结果,由于已更新,建议优先使用此脚本而非预测阶段主文件`MassiveFold.tar.gz`中包含的版本 - `combined_scores.csv`文件包含针对该目标的CASP评估结果(来源:https://predictioncenter.org/) - `CAPRI_assessment.csv`文件包含针对该目标的CAPRI评估结果(来源:https://www.capri-docking.org/assessment/) - `CAPRI_scoring.pdb.gz`是一个多pdb文件,包含针对该目标的所有MassiveFold预测结果,曾用于CAPRI评分阶段
提供机构:
Recherche Data Gouv
创建时间:
2025-03-07
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