Additional file 1 of Genome-Wide Association Study of Rice Diversity Panel Reveals New QTLs for Tolerance to Water Deficit Under the Egyptian Conditions

Additional file 1: Supplementary Figure 1. QQ plots for all traits scored under normal condition in the two growing season of 2021 and 2022. Supplementary Figure 2. QQ plots for all traits scored under water deficit condition in the two growing season of 2021 and 2022. Supplementary Figure 3. The Manhattan plot for all traits scored under FI conditions in the two-growing season of 2020 and 2021. Supplementary Table 1. List of 392 O. sativa accessions and country of origin, principle component structure and fast structure assignment. Supplementary Table 2. the average sum of ranks for all 392 genotypes in each trait at the two growing seasons. Supplementary Table 3. the significant SNPs associated with NDH, FLA, PH, NTP, NPP, PL, HGW and SET% under DI and FI irrigation at the first grwoing season (2021). Supplementary Table 4. the significant SNPs associated with NDH, FLA, PH, NTP, NPP, PL, HGW and SET% under DI and FI irrigation at the second grwoing season (2022).

附加文件1：
补充图1：2021年与2022年两个生长季内，正常水分条件下所有测定性状的QQ图（QQ plot）。
补充图2：2021年与2022年两个生长季内，水分亏缺条件下所有测定性状的QQ图（QQ plot）。
补充图3：2020年与2021年两个生长季内，充分灌溉（Full Irrigation, FI）条件下所有测定性状的曼哈顿图（Manhattan plot）。
补充表1：392份栽培稻（Oryza sativa, O. sativa）种质资源的原产地、主成分结构及fast structure群体结构赋值列表。
补充表2：两个生长季中，392份基因型在各性状上的平均秩和。
补充表3：首个生长季（2021年）内，亏缺灌溉（Deficit Irrigation, DI）与充分灌溉（FI）条件下，与NDH、FLA、PH、NTP、NPP、PL、HGW及SET%相关的显著SNPs。
补充表4：第二个生长季（2022年）内，DI与FI灌溉条件下，与NDH、FLA、PH、NTP、NPP、PL、HGW及SET%相关的显著SNPs。