SARS-CoV-2 variant quantification using kallisto code

Code used together with its results for the paper as part of my Bachelor's Thesis project. The research consists of optimizing the kallisto algorithm for predicting the abundances of SARS-CoV-2 variants in wastewater samples. Specifically, I look at how only sequencing certain regions of the genome influences the prediction accuracy of this pipeline.<br>

本代码及其相关结果用于本人学士学位论文项目中的论文部分。该研究旨在优化kallisto算法（kallisto algorithm），以预测废水样本中SARS-CoV-2变异株的丰度。具体而言，本人研究了仅对基因组特定区域进行测序如何影响该流程的预测准确性。