Anast et al., 2022, MicrobiologyOpen - Table S2

<strong>Table S2. Mapping read statistics of individual replicates from the re-analysis of plasmid data of Assisi et al. 2021, Guariglia-Oropeza et al. 2018, and Tang et al. 2015. </strong> <br> Data is presented by study, from top to bottom: (1) Tang et al. 2015, (2) Guariglia-Oropeza et al. 2018, and (3) Assisi et al. 2021. “Sample” specifies from what sample replicate each statistic data is generated. The “SRA accession” column lists the sequence read archive (SRA) accession number for the corresponding sample. It is important to not that reads from the Guariglia-Oropeza et al. 2018 study that were submitted to the SRA are not the raw reads containing pLM80 reads. We obtained unfiltered reads by directly contacting the authors of this study. “Plasmid” denotes what plasmid is harbored within the strain from the sample. “Total mappings” means the total reads that were mapped to the chromosome and plasmid contigs. “Length of the entire genome (sum contigs)” shows the sum of all base pairs from the chromosome and plasmid contigs. “Length of plasmid (sum contigs)” designates the sum of base pairs of the predicted plasmid contigs. “Reads mapped to plasmid” displays the total reads mapped to plasmid contigs. “Chromosome coverage” denotes the total read coverage of all the chromosome contigs. “Plasmid coverage” indicates the total read coverage of all plasmid contigs. “Percent of total mappings that are attributed to plasmid contigs” shows the percentage of all mapped reads in the sample that were assigned to plasmid contigs.

**表S2：对Assisi等人2021年、Guariglia-Oropeza等人2018年及Tang等人2015年的质粒数据进行重新分析后得到的各重复样本比对读段统计数据**
数据按研究从上至下依次呈现：(1) Tang等人2015年的研究，(2) Guariglia-Oropeza等人2018年的研究，以及(3) Assisi等人2021年的研究。"样本"列指明各统计数据来源于哪个重复样本。"SRA登录号"列列出对应样本的序列读段归档（Sequence Read Archive, SRA）登录号。需要特别说明的是，提交至SRA的Guariglia-Oropeza等人2018年研究的读段并非包含pLM80读段的原始读段，我们通过直接联系该研究的作者获取了未经过滤的原始读段。"质粒"列指明样本菌株所携带的质粒类型。"总比对读段数"指比对至染色体与质粒重叠群的总读段数。"全基因组长度（重叠群总长度）"展示染色体与质粒重叠群的所有碱基对之和。"质粒长度（重叠群总长度）"指预测得到的质粒重叠群的碱基对总数。"比对至质粒的读段数"显示比对至质粒重叠群的总读段数。"染色体覆盖度"指所有染色体重叠群的总读段覆盖度。"质粒覆盖度"指所有质粒重叠群的总读段覆盖度。"质粒重叠群比对读段占总比对读段的百分比"显示样本中分配至质粒重叠群的比对读段占总比对读段的百分比。