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Genomic data of Nanmaohu Park vascular plant specimen, RL0309

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DataCite Commons2025-05-26 更新2026-05-03 收录
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http://gigadb.org/dataset/101372
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We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001531. Preliminary identification is that it is of the family Apocynaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 1083300000bp. We have generated 61740000000bp of data, which gives a theoretical coverage of 57x.

本研究于中国云南省瑞丽植物园开展维管植物样本采集工作。所有样本的采集区域地理坐标为东经97.646389°至98.099167°、北纬23.878333°至24.155556°,海拔范围740米至1200米(海拔基准面为海平面)。 本次共采集维管植物样本1093份,每份样本均摘取幼叶用于测序,同时制作凭证标本。所有凭证标本均保存于国家基因库标本馆(Herbarium of China National GeneBank, HCNGB)。 其中761份样本提取得到了符合测序要求的DNA;剩余332份样本仅制作了凭证标本,相关植株的影像数据已包含于本数据集。这761份样本涵盖49个目、137个科,共计689种维管植物。 目前团队仍在推进所有标本的正式鉴定工作,但截至论文发表时,仅极少数标本完成了科以上分类阶元之外的鉴定。 本数据集包含编号为HCNGB:RUILI:HCNGB_00001531的凭证标本对应的基因组数据与影像资料,经初步鉴定其隶属于夹竹桃科(Apocynaceae)。 基于测序数据的K-mer分布分析预测该物种基因组大小为1083300000bp;本次测序共产生61740000000bp的原始数据,理论覆盖度达57倍。
提供机构:
GigaScience Database
创建时间:
2019-01-24
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