SNPs identified in Adineta vaga individuals L1-L11

This dataset includes SNPs detected among 11 <i>A. vaga</i> individuals L1-L11 (SNP dataset I). SNPs were called with SAMtools/BCFtools (v.1.4.1) from alignments of HiSeq reads to the L1 haploid sub-assembly. File 'A.vaga.L1_L11.SNP.dataset.I.raw.vcf' contains raw variant calls (raw INDEL entries are also present). Filtered SNPs (stringent SNP dataset I) are contained in the file 'A.vaga.L1_L11.SNP.dataset.I.filtered.vcf'. Data are in the VCF format.

本数据集包含在11个<i>A. vaga</i>个体L1至L11中检测得到的单核苷酸多态性（Single Nucleotide Polymorphism，SNPs）数据集I。单核苷酸多态性的变异调用基于SAMtools/BCFtools（v.1.4.1）完成，具体流程为将HiSeq测序读段比对至L1单倍体亚组装序列后进行变异识别。文件'A.vaga.L1_L11.SNP.dataset.I.raw.vcf'包含原始变异调用结果，其中同时包含原始插入缺失变异（Insertion-Deletion，INDEL）条目。经过筛选的单核苷酸多态性（严格版SNP数据集I）存储于文件'A.vaga.L1_L11.SNP.dataset.I.filtered.vcf'中。所有数据采用变体调用格式（Variant Call Format，VCF）存储。