Scripts for the population genomics of the Réunion harrier

A set of scripts to reproduce population genomic analyses of the Réunion harrier. Note that these scripts should be the same as the ones found on Github: https://github.com/YannBourgeois/Scripts_harrier (commit 20a56b1).
In each folder there is a README file, which is simply a text file containing the annotated commands that were used for different parts of the analysis. These commands often call bash scripts (files ending with '.sh') that can be launched on a SLURM scheduler, but would probably require minor modifications to work on your own resource (e.g. queues names, path to where the data are located, number of cores requested, etc.). Make sure to examine and edit the scripts before launching.
The VCF files starting with "fivesamples" correspond to RNA-seq data called with GATK, including monomorphic sites.

本数据集收录用于复现留尼汪鹞（Réunion harrier）种群基因组学分析的脚本。请注意，这些脚本与GitHub仓库https://github.com/YannBourgeois/Scripts_harrier（提交哈希值20a56b1）中的代码完全一致。
每个子文件夹内均包含一个README文件，该文件为纯文本文档，收录了针对分析各环节的带注释命令。这些命令通常会调用后缀为`.sh`的Bash脚本，可在SLURM调度器上运行，但在您的自有计算资源上部署时，可能需要进行小幅适配调整（例如队列名称、数据存储路径、申请的CPU核心数等）。请务必在运行前检查并编辑相关脚本。
以"fivesamples"为前缀的VCF（Variant Call Format）文件，对应通过GATK（Genome Analysis Toolkit）完成变异检出的RNA-seq测序数据，其中涵盖单态位点。