Genomic data of Nanmaohu Park vascular plant specimen, RL0641
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http://gigadb.org/dataset/101704
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We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001791. Preliminary identification is that it is of the family Oleaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 397769000bp. We have generated 65580000000bp of data, which gives a theoretical coverage of 164.9x.
本研究于中国云南省瑞丽植物园开展维管植物采样工作。所有采样点的地理范围为东经97.646389°至98.099167°、北纬23.878333°至24.155556°,海拔区间为740米至1200米(以海平面为基准)。本次共采集维管植物样本1093份,每份样本均取幼叶用于测序,同时制作凭证标本。所有凭证标本均保存于国家基因库标本馆(Herbarium of China National GeneBank, HCNGB)。
其中761份样本提取得到可用于测序的DNA;剩余332份样本仅完成凭证标本制作,其对应植株的图像已公开于本数据集。上述761份样本涵盖49个目、137个科下的689个维管植物物种。
目前研究团队仍在对所有标本进行正式分类鉴定,但在本数据集发表时,仅极少数样本完成了科以上阶元之外的物种鉴定。
本数据集包含编号为HCNGB:RUILI:HCNGB_00001791的凭证标本对应的基因组测序数据与植株图像,经初步鉴定其隶属于木犀科(Oleaceae)。
通过测序数据的K-mer分布分析预测该物种基因组大小为397769000bp;本次共生成65580000000bp的测序数据,理论测序覆盖度达164.9×。
提供机构:
GigaScience Database
创建时间:
2019-01-24



