Data for LSA analysis

This code is supplementary to the paper "Kinetic modulation of bacterial hydrolases by microbial community structure in coastal waters" by Abad et al. <br> It contains the following files: 0) README.txt: This README file. 1) LSA functions.R: It contains the functions implemented in R to perform the Local Similarity analysis. Our specific modifications related to the function LocalSimilarity3 are indicated by the comment "#New: modified function". 2) LSA script.R: It is an updated version of the code developed by Ruan et al (2006) that has been used to perform the Local Similarity analysis in our study. The comment "#New: modified function” indicates our specific modifications within the original code. The following modifications were added to the original code: The calculation of the linear interpolation of missing values (NA’s) using the R package zoo (Zeleis et al 2021). The calculation of the q-values by using the R package qvalue (Storey et al 2022). <strong>NOTE:</strong> it is important to set the working directory in the same folder where all the provided files are stored.