A Human Thymus Ageing Cell Atlas Defines A Spatially Resolved Model of Involution - Supplementary Tables

This repository contains all Supplementary Tables for the manuscript: "A Human Thymus Ageing Cell Atlas Defines A Spatially Resolved Model of Involution": Table S1. Sample metadata for single-cell and spatial transcriptomics data Table S2. Cell type hierarchy levels and cell population marker genes Table S3. Quantification of histological compartments across Visium and Xenium samples Table S4. Differential gene expression analysis results (Annotation level taa_l4) Differential gene expression analysis: Design 1 - adult vs epaed (taa_l4) Differential gene expression analysis: Design 1 - F vs M (taa_l4) Differential gene expression analysis: Design 1 - lpaed vs epaed (taa_l4) Differential gene expression analysis: Design 2 - F vs M (taa_l4) - sex effect Table S5. Differential gene expression analysis results (Annotation level taa_l3) Differential gene expression analysis: Design 1 - adult vs epaed (taa_l3) Differential gene expression analysis: Design 1 - F vs M (taa_l3) Differential gene expression analysis: Design 1 - lpaed vs epaed (taa_l3) Table S6. Results of gene set-based analyses: Tau tissue specificity scores for genes according to GTEx bulk RNA-seq data Progeny pathway enrichment scores for cell types and donors Biological Process Gene Ontology analysis Gene set enrichment analysis (GSEA, based on Table S4 - adult vs epaed) Table S7. Ligand-receptor pairs considered in cell-communication analysis Table S8. List of RareCyte antibodies