Complete bacteriophage genomes containing simulated mutations

These files are associated with the publication "Ultrafast and accurate sequence alignment and clustering of viral genomes".phage-genomes_simulated_mutations.csv the expected (true) total ANI (tANI) values in the 70-100% range, derived from 10,000 pairs of bacteriophage genomes subjected to simulated mutations, including different levels of substitution, insertion, deletion, duplication, inversion, and translocation events. Mutations were introduced using Mutation-Simulator v3.0.2.Column descriptions:sample: sample IDref_id: Reference genome IDalt_id: Altered reference IDtotal_ani: True total ANI [%]ref_length: Reference genome lengthalt_length: Altered reference genome lengthsn: Substitions frequencyde: Deletions frequencyins: Insertions frequencydu: Duplications frequencyinv: Inversions frequencytl: Translocations frequencyn_sn: Substituted nucleotidesn_de: Deleted nucleotidesn_ins: Inserted nucleotidesn_du: Duplicated nucleotidesn_inv: Inverted nucleotidesn_tl: Translocated nucleotides2. phage-genomes_simulated_mutations.fnanucleotide sequences of reference and altered genomes.<br>

本数据集关联于已发表论文《超快且精准的病毒基因组序列比对与聚类》（原英文标题：Ultrafast and accurate sequence alignment and clustering of viral genomes）。

phage-genomes_simulated_mutations.csv 文件存储了70%至100%区间内的预期（真实）总平均核苷酸一致性（true total ANI, tANI）数值，该数据集源自10000对经模拟突变处理的噬菌体基因组对，模拟突变涵盖不同程度的碱基替换、插入、缺失、重复、倒位及易位事件。突变的引入操作通过Mutation-Simulator v3.0.2工具完成。

该文件的列字段说明如下：
- sample：样本编号（ID）
- ref_id：参考基因组编号（ID）
- alt_id：经改造的参考基因组编号（ID）
- total_ani：真实总平均核苷酸一致性（tANI），单位为百分比（%）
- ref_length：参考基因组长度
- alt_length：经改造的参考基因组长度
- sn：碱基替换频率
- de：缺失事件频率
- ins：插入事件频率
- du：重复事件频率
- inv：倒位事件频率
- tl：易位事件频率
- n_sn：被替换的核苷酸总数
- n_de：被缺失的核苷酸总数
- n_ins：被插入的核苷酸总数
- n_du：被重复的核苷酸总数
- n_inv：被倒位的核苷酸总数
- n_tl：被易位的核苷酸总数

2. phage-genomes_simulated_mutations.fna：存储参考基因组与经改造的参考基因组的核苷酸序列。