Phylogenetic trees and domain analysis of PGRPs and GNBPs

Phylogenetic trees and domain analysis of PGRPs and GNBPs of <em>M. separata </em>and <em>D. melanogaster </em>using DoMosaics. Phylogenetic trees of GNBPs and PGRPs, plus the domain structure of each gene, are shown in PGRP_GNBP_tree.pptx. PGRP.nwk and GNBP.nwk are the files used for the construction of a phylogenetic tree. PGRP.domtree and GNBP.domtree are the raw files of the phylogenetic trees. Genbank accession IDs of <em>D. melanogaster</em> PGRP and GNBP are list in Accession_IDs_Dm_GNBP_PGRP.csv.

本研究借助DoMosaics工具，对粘虫（M. separata）与黑腹果蝇（D. melanogaster）的肽聚糖识别蛋白（Peptidoglycan Recognition Proteins, PGRPs）及革兰氏阴性菌结合蛋白（Gram-negative bacteria-binding Proteins, GNBPs）开展系统发育树构建与结构域分析。肽聚糖识别蛋白与革兰氏阴性菌结合蛋白的系统发育树，以及各基因的结构域组成，均展示于PGRP_GNBP_tree.pptx文件中。PGRP.nwk与GNBP.nwk为系统发育树构建所用的输入文件。PGRP.domtree与GNBP.domtree为系统发育树的原始数据文件。黑腹果蝇（D. melanogaster）的肽聚糖识别蛋白与革兰氏阴性菌结合蛋白的GenBank登录号均列于Accession_IDs_Dm_GNBP_PGRP.csv文件中。