minus_assembly_dataset

Contains seven items:<i>V. vitis-idaea</i> ssp. <i>minus</i> <i>de novo</i> assembly in fasta format.<i>V. vitis-idaea</i> ssp. <i>minus</i> scaffolded assembly by mapping to the bilberry genome in agp format based on contig names in the <i>de novo</i> assembled genome (<i>V. myrtillus</i>; Wu et al. 2021).<i>V. vitis-idaea</i> ssp. <i>minus</i> scaffolded assembly by mapping to the bilberry genome in fasta format (<i>V. myrtillus</i>; Wu et al. 2021).Annotation of genes/mRNAs associated with the scaffolded genome in .gff3 format.Protein sequences from gene annotation in amino acid fasta or faa format.Coding sequences in nucleotide fasta format.Annotation of transposable elements associated with the scaffolded genome in gff3 format.Raw sequences generated in this study are found in NCBI under PRJNA998787: Oxford Nanopore (SRR25468432-SRR25468441), Illumina NovaSeq (SRR25477289)The contig-level assembly fasta can also be found in NCBI: JAUYVF000000000Reference: Wu,C., Deng,C., Hilario,E., Albert,N., Lafferty,D., Plunkett,B., Elborough,C., Saei,A., Jaakola,L., Karppinen,K., Grande,A., Kylli,R., Allan,A., Espley,R. and Chagne,D. 2021. A chromosome-scale assembly of the bilberry genome identifies a complex locus controlling berry anthocyanin composition. Molecular Ecology Resources, DOI 10.1111/1755-0998.13467

本数据集共包含7项内容：
1. 越橘（*V. vitis-idaea*）亚种*minus*的从头（de novo）组装FASTA格式文件
2. 以*V. myrtillus*（Wu等，2021）的越橘基因组为参考，依据该从头组装基因组中的重叠群（contig）名称进行比对，得到的*V. vitis-idaea*亚种*minus*支架组装AGP格式文件
3. 以*V. myrtillus*（Wu等，2021）的越橘基因组为参考进行比对，得到的*V. vitis-idaea*亚种*minus*支架组装FASTA格式文件
4. 与该支架组装基因组相关的基因/mRNA注释信息，格式为GFF3
5. 基因注释得到的蛋白质序列，格式为氨基酸FASTA或FAA
6. 编码序列，格式为核苷酸FASTA
7. 与该支架组装基因组相关的转座元件注释信息，格式为GFF3

本研究产生的原始测序数据可在NCBI数据库中以项目编号PRJNA998787检索获取，包含牛津纳米孔测序数据（SRR25468432-SRR25468441）与Illumina NovaSeq测序数据（SRR25477289）。

该重叠群级组装的FASTA文件也可在NCBI数据库中获取，登录号为JAUYVF000000000。

参考文献：
Wu, C., Deng, C., Hilario, E., Albert, N., Lafferty, D., Plunkett, B., Elborough, C., Saei, A., Jaakola, L., Karppinen, K., Grande, A., Kylli, R., Allan, A., Espley, R. & Chagne, D. 2021. 越橘基因组染色体级组装鉴定出控制浆果花青素成分的复杂位点. 分子生态学资源, DOI: 10.1111/1755-0998.13467