Additional File 8:

Table S3. Detailed information of the conserved GWAS sites over the two years (2014 and 2015). QTL_1 to QTL_29: conserved QTLs for the same trait(s) over the two years; QTL_30 to QTL_50: conserved QTL regions but for different traits between the two years; FP: full panel; SBN: secondary branch number; PBN: primary branch number; SpN: spikelet number; SBintL: secondary branch internode length; PBintL: primary branch internode length; PBL: primary branch length; SBL: secondary branch length; RL: Rachis length; PH: plant height; TN: tiller number; eTN: efficient tiller number. Locus-id: locus identification number in MSU7.0 (for coding genes) and mirBase v21 (for miRNAs); (*) Functionally characterized candidate genes in rice from OGRO and funRiceGenes databases ( qtaro.abr.affrc.go.jp /ogro; funricegenes.ncpgr.cn ). Genomic coordinates in red indicate genes that are located at a distance below 50Â kb from the LD block of the corresponding QTL. (XLS 108 kb)

附表S3：2014年与2015年两年间保守全基因组关联分析（Genome-Wide Association Study, GWAS）位点的详细信息。QTL_1至QTL_29：两年间针对相同性状的保守数量性状位点（Quantitative Trait Locus, QTL）；QTL_30至QTL_50：两年间针对不同性状的保守QTL区域；FP：全群体（full panel）；SBN：二级分枝数（secondary branch number）；PBN：一级分枝数（primary branch number）；SpN：小穗数（spikelet number）；SBintL：二级分枝节间长度（secondary branch internode length）；PBintL：一级分枝节间长度（primary branch internode length）；PBL：一级分枝长度（primary branch length）；SBL：二级分枝长度（secondary branch length）；RL：穗轴长度（rachis length）；PH：株高（plant height）；TN：总分蘖数（tiller number）；eTN：有效分蘖数。基因座编号（Locus-id）：编码基因采用MSU7.0版本的基因座识别编号，微小RNA（miRNAs）则采用miRBase v21版本的编号；(*) 标注为来自OGRO与funRiceGenes数据库（访问网址：qtaro.abr.affrc.go.jp/ogro；funricegenes.ncpgr.cn）的已功能验证水稻候选基因；红色标注的基因组坐标对应的基因，与对应QTL的连锁不平衡（Linkage Disequilibrium, LD）块间距小于50 kb。（XLS格式，文件大小108 KB）