Supplementary Data of "Stepwise pathway for early evolutionary assembly of dissimilatory sulfite and sulfate reduction"

<strong>Sinje Neukirchen</strong>^{<strong>1</strong>}<strong>, Inês A. C. Pereira</strong>^{<strong>2</strong>}<strong>, Filipa L. Sousa</strong>^{<strong>1</strong>}<strong>*</strong> ¹ Genome Evolution and Ecology Group, Department of Functional and Evolutionary Ecology, University of Vienna, Djerassiplatz 1, 1030 Wien, Austria ² Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, Portugal. <br> <br> Supplementary Data 1 – FASTA files containing all amino acid sequences including the NCBI RefSeq/GenBank/IMG accession numbers per protein. Supplementary Data 2 – Mapping table of selected sequences after 90 % global identity redundancy reduction to the corresponding protein sequence accession numbers, genome identifiers, and taxonomic affiliation. Supplementary Data 3 – Trimmed multiple sequence alignments of protein sequences present in only complete genomes. Supplementary Data 4 – Trimmed multiple sequence alignments of protein sequences covering the full diversity including metagenome-derived genomic assemblies. Supplementary Data 5 – Phylogenetic reconstruction of protein sequences present in only complete genomes using ModelFinder with best model selection. Supplementary Data 6 – Phylogenetic reconstruction of protein sequences covering the full diversity including metagenome-derived genomic assemblies using ModelFinder with best model selection. Supplementary Data 7 – Phylogenetic reconstruction of protein sequences present in only complete genomes using the model LG+I+G4. Supplementary Data 8 – Phylogenetic reconstruction of protein sequences covering the full diversity including metagenome-derived genomic assemblies using the model LG+I+G4. <br> <br>

辛耶·诺伊基尔希（Sinje Neukirchen）¹，伊内斯·A·C·佩雷拉（Inês A. C. Pereira）²，菲利帕·L·苏萨（Filipa L. Sousa）^1*<br>¹ 维也纳大学功能与进化生态系基因组进化与生态学研究组，奥地利维也纳1030，杰拉西广场1号<br>² 里斯本新大学安东尼奥·哈维尔化学与生物工艺研究所，葡萄牙奥埃拉什，共和国大道2780-157号<br><br>补充数据1——包含所有氨基酸序列的FASTA格式文件，每条蛋白均附带NCBI RefSeq、GenBank、IMG登录号。<br>补充数据2——经90%全局序列同一性冗余过滤后的筛选序列映射表，包含对应蛋白序列登录号、基因组标识符及分类学归属信息。<br>补充数据3——仅来自完整基因组的蛋白序列的修剪后多重序列比对结果。<br>补充数据4——覆盖全部多样性的蛋白序列的修剪后多重序列比对结果，涵盖宏基因组来源的基因组组装序列。<br>补充数据5——采用ModelFinder进行最优模型选择后，针对仅来自完整基因组的蛋白序列构建的系统发育重建结果。<br>补充数据6——采用ModelFinder进行最优模型选择后，针对覆盖全部多样性（含宏基因组来源的基因组组装序列）的蛋白序列构建的系统发育重建结果。<br>补充数据7——采用LG+I+G4模型，针对仅来自完整基因组的蛋白序列构建的系统发育重建结果。<br>补充数据8——采用LG+I+G4模型，针对覆盖全部多样性（含宏基因组来源的基因组组装序列）的蛋白序列构建的系统发育重建结果。