2024_04_03

Files used for alfalfa diversity analysis:Original files from DArT are:DAl23-8031_MADC_snpID_rename_updatedSeq_filter_miss_rm10plusHaps.csv = 12,295 microhaplotypes in 2,994 out of 3,000 regions.DAl23-8031_MADC_snpID_rename_updatedSeq_filter_miss_rm10plusHaps_RefAlt.csv = only Ref and Alt reads of target SNPs in 2,994 out of 3,000 regions.4_readDArTag_81bp.R = R script to convert the MACD files to VCF and GenoDive format.GenoDive_Micro.txt = GenoDive file with microhaplotypesGenoDive_Target.txt = GenoDive file containing Target SNPsmetadata_1 and metadata_2 contain information linking samples to populations.<br>

用于紫花苜蓿多样性分析的文件如下：源自多样性阵列技术（DArT）的原始文件包括：
DAl23-8031_MADC_snpID_rename_updatedSeq_filter_miss_rm10plusHaps.csv：包含3000个区域中2994个区域内的12295个微单倍型（microhaplotypes）；
DAl23-8031_MADC_snpID_rename_updatedSeq_filter_miss_rm10plusHaps_RefAlt.csv：仅包含3000个区域中2994个区域内目标单核苷酸多态性位点（SNPs）的参考等位基因（Ref）与变异等位基因（Alt）测序读段；
4_readDArTag_81bp.R：用于将MACD文件转换为VCF格式与GenoDive格式的R脚本；
GenoDive_Micro.txt：包含微单倍型的GenoDive格式文件；
GenoDive_Target.txt：包含目标单核苷酸多态性位点的GenoDive格式文件；
metadata_1与metadata_2：包含样本与群体对应关联信息的元数据（metadata）文件。