Pseudomonas sp. LAMO17WK12:I2. Pseudomonas sp. LAMO17WK12:I2

This is a reference bacterial genome from a study to characterize how plant host genes affect the microbiome community assemblage and how the microbiome influences plant phenotypes, such as drought or salt tolerance, nutrient use, productivity, pathogen resistance, and yield. Plant-associated metagenomes are being characterized by 16S ribotyping, metagenome and reference genome sequencing and metatranscriptome sequencing. Experimental systems used to characterize the interplay between host and associated communities in different plant types have been chosen to be relevant to energy and environmental concerns, for example, Arabidopsis as a model, corn, and a key biofuel crop (Miscanthus).

本数据集为一项研究的参考细菌基因组，该研究旨在解析植物宿主基因如何调控微生物组群落组装模式，以及微生物组对植物表型的影响——具体涵盖耐旱与耐盐性、养分利用效率、生长生产力、病原体抗性与作物产量。本次研究通过16S核糖体分型（16S ribotyping）、宏基因组与参考基因组测序以及宏转录组测序，对植物关联宏基因组进行表征。为解析不同植物类型中宿主与关联群落的互作关系，研究选取了契合能源与环境关切的实验体系：包括模式植物拟南芥、玉米，以及关键生物燃料作物芒草（Miscanthus）。