Predicted circRNA candidates of all software tools

The raw, filtered or/and annotated predicted candidates by each software under different datasets (can be downloaded from figshare). circ_candidates.bed (CIRCexplorer2) or other different files exclude followings: raw identified circRNA bed or other format files for each software package circ_candidates_convert.bed: coonverted circRNA bed format file (genome coordinate converted to uniform 0-based format) circularRNA_known.txt: annotated circRNA information file generated from CIRCexplorer2 annotate moudle circRNA_known_annotated.txt: it contains annotated circRNA list (circularRNA_known.txt) merged by the known circRNA retrieved from circBase and circAtlas database BackgroundPlotdf.csv: The dataset of plotting upset plot of circRNA candidates on background datasets with different depths BackgroundRaw.csv: Raw datasets of expression matrix of circRNA predicted by all software on background datasets with different depths performance.csv: recorded prediction performance indices of all software tools

本数据集涵盖各软件在不同数据集（可从Figshare平台下载）上生成的原始、经筛选或已标注的预测环状RNA（circular RNA，circRNA）候选集。其中，circ_candidates.bed（对应CIRCexplorer2工具）及其他同类文件需排除各软件包生成的原始已识别circRNA的BED格式或其他格式文件；circ_candidates_convert.bed为已完成格式转换的circRNA BED格式文件，其基因组坐标已统一转换为0起始坐标格式；circularRNA_known.txt是通过CIRCexplorer2的annotate模块生成的已标注circRNA信息文件；circRNA_known_annotated.txt包含从circBase与circAtlas数据库调取的已知circRNA，并与circularRNA_known.txt合并后得到的已标注circRNA列表；BackgroundPlotdf.csv为用于绘制不同深度背景数据集上circRNA候选集UpSet图的数据集；BackgroundRaw.csv为所有软件在不同深度背景数据集上预测得到的circRNA表达矩阵原始数据集；performance.csv为记录所有软件工具预测性能指标的文件。