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SNPs with cell-type-specific AEI associated with HbA1c in the Fadista data when the Baron data were used as reference.

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Figshare2021-03-04 更新2026-04-28 收录
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We applied BSCET to the Fadista pancreatic islets bulk RNA-seq data [15] using the MuSiC [14] proportion estimates obtained from the Baron single-cell reference [12]. We detected 5 SNPs in 4 genes with cell-type-specific AEI significantly associated with HbA1c (FDR adjusted P-value (XLSX)

我们将BSCET应用于Fadista胰岛批量RNA测序(bulk RNA-seq)数据集[15],采用从Baron单细胞参考数据集[12]中获取的MuSiC [14]细胞比例估计值开展分析。本研究在4个基因中检测到5个单核苷酸多态性(Single Nucleotide Polymorphism,SNPs),其细胞类型特异性等位基因特异性表达(Allele-specific Expression,AEI)与糖化血红蛋白(Hemoglobin A1c,HbA1c)显著相关,相关统计检验的P值经错误发现率(False Discovery Rate,FDR)校正,完整数据以XLSX格式存储。

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2021-03-04
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