MOESM1 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

Additional file 1. List of reactions, compounds and genes in the plant cell wall degradation network (PCWDN) of N. crassa. The first, second and third sheets contain the list of reactions, genes and compounds, respectively, in the PCWDN. The fourth sheet gives the participation of the PCWDN genes in the cellulose, hemicellulose, pectin and starch degradation pathways. The fifth and sixth sheets contain the feature matrix and annotation confidence scores, respectively, for genes in the PCWDN of N. crassa based on functional genomics, transcriptomics, proteomics and genetics data as well as biochemical characterizations. The seventh sheet contains a list of research articles utilized to reconstruct the PCWDN. The eighth sheet contains information on the structural units comprising the backbone and side chains of different plant cell wall polysaccharides such as cellulose, xylan, xyloglucan, mannan, galactomannan, glucomannan, galactoglucomannan, mixed-linkage glucan, homogalacturonan, xylogalacturonan, rhamnogalacturonan I, amylose and amylopectin. NoC no carbon, CB cellobiose, XG xyloglucan, MLG mixed-linkage glucan, OPP orange peel powder.

附加文件1：粗糙脉孢菌（N. crassa）植物细胞壁降解网络（Plant Cell Wall Degradation Network, PCWDN）的反应、化合物与基因列表。该文件的第1、2、3工作表分别收录了该植物细胞壁降解网络中的反应、基因与化合物列表。第4工作表展示了该网络的基因在纤维素、半纤维素、果胶及淀粉降解通路中的参与情况。第5和第6工作表分别收录了基于功能基因组学、转录组学、蛋白质组学、遗传学数据及生化表征结果得到的粗糙脉孢菌植物细胞壁降解网络基因的特征矩阵与注释置信度评分。第7工作表列出了用于构建该植物细胞壁降解网络的研究文献清单。第8工作表收录了不同植物细胞壁多糖的骨架与侧链结构单元相关信息，涵盖纤维素、木聚糖、木葡聚糖、甘露聚糖、半乳甘露聚糖、葡甘露聚糖、半乳葡甘露聚糖、混合键型葡聚糖、同型半乳糖醛酸聚糖、木糖半乳糖醛酸聚糖、鼠李半乳糖醛酸聚糖I、直链淀粉及支链淀粉。缩写说明：NoC（no carbon，无碳源）、CB（cellobiose，纤维二糖）、XG（xyloglucan，木葡聚糖）、MLG（mixed-linkage glucan，混合键型葡聚糖）、OPP（orange peel powder，橙皮粉）。