CAGE peaks annotation (mm10 v3)
收藏Figshare2017-04-17 更新2026-04-29 收录
下载链接：
https://figshare.com/articles/dataset/Re-processing_of_the_data_generated_by_the_FANTOM5_project_mm10_v3_CAGE_peaks_annotation/4880315
下载链接
链接失效反馈官方服务：
资源简介：
Annotation files = Transcript association * (Human phase1+2 set) hg38_liftover+new_CAGE_peaks_phase1and2_trans.txt * (Mouse phase1+2 set) mm10_liftover+new_CAGE_peaks_phase1and2_trans.txt (Format) 1) CAGE peak ID "(Old FANTOM5 CAGE Peak ID);(new TSS ID)" 2) Associated transcript ID 3) Distance between CAGE peak and associated transcript 4) Number of transcripts within 500bp (polII transcripts) or 50bp (non-polII transcripts) 5) All transcripts within the above cutoffs (500bp or 50bp) (Transcript ID:distance) = Gene/protein association * (Human phase1+2 set) hg38_liftover+new_CAGE_peaks_phase1and2_annot.txt * (Mouse phase1+2 set) mm10_liftover+new_CAGE_peaks_phase1and2_annot.txt (Format) 1) CAGE peak ID "(Old FANTOM5 CAGE Peak ID);(new TSS ID)" 2) Associated transcript ID 3) Distance between CAGE peak and associated transcript 4) EntrezGene GeneID 5) HGNC/MGI ID 6) UniProt ID 7) Associated gene name 8) Associated gene symbol 9) Associated gene synonym 10) Source of associated gene = CAGE peak name * (Human phase1+2 set) human_phase1and2_CAGE_Peak_name.txt * (Mouse phase1+2 set) mouse_phase1and2_CAGE_Peak_name.txt (Format) 1) CAGE peak ID "(Old FANTOM5 CAGE Peak ID);(new TSS ID)" 2) New CAGE peak name 3) Old (Obsoleted) CAGE peak name = Annotation sources Jun. 16th, 2015 snapshots of the following databases * EntrezGene * Gencode (Human v22, Mouse vM4) * HGNC * MGI * UCSC Genome Browser (hg38/mm10) * UniProt
注释文件 = 转录本关联文件 *（人类1+2期数据集）hg38_liftover+new_CAGE_peaks_phase1and2_trans.txt *（小鼠1+2期数据集）mm10_liftover+new_CAGE_peaks_phase1and2_trans.txt（格式说明）：1) CAGE峰（CAGE, Cap Analysis of Gene Expression Peak）ID，格式为「(旧版FANTOM5 CAGE峰ID);(新版转录起始位点TSS, Transcription Start Site ID)」；2) 关联转录本ID；3) CAGE峰与关联转录本的间距；4) 阈值范围内的转录本数量：RNA聚合酶II（Pol II）转录本取500bp范围内，非RNA聚合酶II转录本取50bp范围内；5) 上述阈值范围内的所有转录本，格式为「转录本ID:间距」
= 基因/蛋白质关联文件 *（人类1+2期数据集）hg38_liftover+new_CAGE_peaks_phase1and2_annot.txt *（小鼠1+2期数据集）mm10_liftover+new_CAGE_peaks_phase1and2_annot.txt（格式说明）：1) CAGE峰ID，格式为「(旧版FANTOM5 CAGE峰ID);(新版TSS ID)」；2) 关联转录本ID；3) CAGE峰与关联转录本的间距；4) EntrezGene基因ID；5) HGNC/MGI ID；6) UniProt ID；7) 关联基因名称；8) 关联基因符号；9) 关联基因同义词；10) 关联基因来源
= CAGE峰名称文件 *（人类1+2期数据集）human_phase1and2_CAGE_Peak_name.txt *（小鼠1+2期数据集）mouse_phase1and2_CAGE_Peak_name.txt（格式说明）：1) CAGE峰ID，格式为「(旧版FANTOM5 CAGE峰ID);(新版TSS ID)」；2) 新版CAGE峰名称；3) 旧版（已废弃）CAGE峰名称
= 注释来源：采用2015年6月16日快照版本的以下数据库：EntrezGene、Gencode（人类版本v22、小鼠版本vM4）、HGNC、MGI、UCSC基因组浏览器（hg38/mm10）、UniProt
创建时间：
2017-04-17
