Genome sequence of rice new core collection (tropical Japonica). Oryza sativa

Rice new core collection (tropical Japonica) consists of 140 accessions and is resequenced by using the NGS technology. Mapping of the NGS reads to the Nipponbare reference genome is performed for the development of GWAS system with Rice new core collection (tropical Japonica) . In addition, mapped information is also used for TASUKE system to visualize the haplotypes of each gene among this population.

水稻新核心种质集合（热带粳稻型，tropical Japonica）包含140份种质材料，并通过下一代测序（Next-Generation Sequencing, NGS）技术完成了全基因组重测序。研究团队将该测序获得的NGS读段（NGS reads）比对至日本晴（Nipponbare）参考基因组，以依托该种质集合开发全基因组关联分析（Genome-Wide Association Study, GWAS）系统。此外，上述比对得到的基因组信息还被应用于TASUKE系统，用于可视化该种质群体中各基因的单倍型。