T2D benchmarking output 2 -- Supp Fig 1 D-E data

These are the data used to generate the outputs described in the upset plots in Supp Fig 1D-E, which were generated as a response to reviewers. If you want to see how these are plotted, check out the Rmd here (https://github.com/chiragjp/ubiome_robustness). If you want to understand more about how they are generated, they are processed outputs from the quantvoe pipeline. The code to run this analysis is also in the above Git repo, in the revisions folder (analysis code: https://github.com/chiragjp/ubiome_robustness/blob/main/revisions/parse_revisions2_analysis.R processing code: https://github.com/chiragjp/ubiome_robustness/blob/main/revisions/parse_revisions2_analysis.R)

本数据集用于生成补充图（Supplementary Figure）1D-E中UpSet图（Upset Plot）对应的输出结果，该图表系为回应审稿人意见而制作。若需查看该图表的绘制方式，可访问如下路径的R Markdown（Rmd）文件：https://github.com/chiragjp/ubiome_robustness。若需进一步了解数据集的生成逻辑，其源自quantvoe流程（quantvoe pipeline）的预处理输出结果。本分析所用的代码同样存储于上述Git仓库的revisions文件夹中（分析代码：https://github.com/chiragjp/ubiome_robustness/blob/main/revisions/parse_revisions2_analysis.R；预处理代码：https://github.com/chiragjp/ubiome_robustness/blob/main/revisions/parse_revisions2_analysis.R）