Additional file 3: of Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew

Table S13. Mapping of RNA-seq reads to two PM genomes. Table S14. Percentages of PM genes expressed in mycelia and/or haustoria. Table S15. Functional enrichment of the differentially expressed genes in Oidium neolycopersici UMSG2. Table S16. Functional enrichment of the differentially expressed genes in Golovinomyces cichoracearum UMSG3. Table S17. Orthologous genes up-regulated between any two of the three PM biotypes examined. Table S18. Orthologus genes Up-regulated in haustoria in both OnM2 and GcM3. Table S19. Orthologus genes Up-regulated in haustoria in both GcC1 and GcM3. Table S20. Total number and percentage of predicted partial genes that are expressed. Table S21. A comparison of powdery mildew interaction with dicot and monocot hosts. Table S22. Composition of genes defining the secretome in eight PM genomes. Table S23. Predicted powdery mildew genes encoding proteins with a YxC motifa in eight PM genomes. Table S24. Ka/Ks ratios of CSEP gene clusters from seven PM biotypes. Table S25. High-level expression of six G. cichoracearum UCSC1-specific CSEP genes in haustoria. Table S26. CSEP genes of Gc UCSC1 and Gc UMSG3 that show induced expression in haustoria. Table S27. Shared CSEP genes among Gc UCSC1, Gc UMSG3 and Gc UMSG1 that show induced expression in haustoria of Gc UCSC1 and Gc UMSG3. Table S28. O. neolycopersici UMSG2-specific CSEP genes that are induced in haustoria. Table S29. BUSCO completeness assessment of the protein set for each PM biotype. (XLSX 234 kb)

表S13：RNA测序读数（RNA-seq reads）比对至两种白粉菌（powdery mildew, PM）基因组
表S14：菌丝体和/或吸器中表达的白粉菌基因占比
表S15：番茄粉孢菌（Oidium neolycopersici）UMSG2的差异表达基因（differentially expressed genes）功能富集分析
表S16：菊科白粉菌（Golovinomyces cichoracearum）UMSG3的差异表达基因功能富集分析
表S17：所检测的3种白粉菌生物型中任意两种间上调表达的直系同源基因（orthologous genes）
表S18：在OnM2与GcM3两种生物型的吸器中均上调表达的直系同源基因
表S19：在GcC1与GcM3两种生物型的吸器中均上调表达的直系同源基因
表S20：已表达的预测部分基因的总数及占比
表S21：白粉菌与双子叶及单子叶宿主的互作比较分析
表S22：8个白粉菌基因组中定义分泌组（secretome）的基因组成
表S23：8个白粉菌基因组中预测的编码含YxC基序（YxC motif）蛋白的白粉菌基因
表S24：7种白粉菌生物型的候选分泌效应蛋白（Candidate Secreted Effector Proteins, CSEP）基因簇的Ka/Ks比值
表S25：菊科白粉菌UCSC1（G. cichoracearum UCSC1）的6个特异性候选分泌效应蛋白基因在吸器中呈高表达
表S26：菊科白粉菌UCSC1与UMSG3中在吸器内诱导表达的候选分泌效应蛋白基因
表S27：菊科白粉菌UCSC1、UMSG3与UMSG1共有的候选分泌效应蛋白基因，且该类基因在UCSC1与UMSG3的吸器中呈诱导表达
表S28：番茄粉孢菌UMSG2特异性且在吸器中诱导表达的候选分泌效应蛋白基因
表S29：各白粉菌生物型蛋白质集的BUSCO完整性评估
（文件格式为XLSX，大小234千字节）