37a30206-29b3-47a0-90c4-eee326fe5b8b - samples
收藏NIAID Data Ecosystem2026-03-11 收录
下载链接:
https://www.omicsdi.org/dataset/ega/EGAD00001004155
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资源简介:
Genotype calls for 83 Aboriginal Australian genomes split by chromosomes. In short, genotypes were called individually with samtools. They were subsequently filtered with thresholds related to sequencing depth, location of variants, sequencing error, and strand bias. Once combined, the genotypes were filtered when not in Hardy-Weinberg equilibrium. The genomes were phased with IMPUTE using the 1000 Genomes reference panel. NB: for the Y chromosomes, only the 44 Aboriginal Australian males are included.EGA dataset EGAD00001004155
针对83个澳大利亚原住民基因组的基因型分型结果,按染色体进行拆分。简言之,基因型分型通过samtools(samtools)独立完成,随后基于测序深度、变异位点位置、测序误差及链偏倚相关阈值完成过滤。合并后的基因型分型结果若不符合哈迪-温伯格平衡(Hardy-Weinberg equilibrium),将被进一步过滤。所有基因组通过IMPUTE(IMPUTE)软件,以1000 Genomes参考面板(1000 Genomes reference panel)进行单体型相位分型。注:对于Y染色体,仅纳入44名澳大利亚原住民男性样本。本数据集为EGA数据库收录的EGAD00001004155条目。
创建时间:
2020-07-16



