Catalog of NCBI sequence read archive (SRA) data for salamanders at the Hubbard Brook Experimental Forest 2012-2021

This project was designed to describe fine-scale population genetic differentiation of the stream salamander Gryinophilus porphyriticus among five study streams in the Hubbard Brook Experimental Forest. The data are paired with intensive capture-recapture data to assess direct fitness effects of individual genetic diversity, including effects of individual multilocus heterozygosity on stage-specific survival probabilities. This dataset publishes a manifest of the genomic sequence reads submitted to the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA). These samples are published at NCBI under the BioProject ID 1090913 (https://www.ncbi.nlm.nih.gov/bioproject/1090913). The tables here include sample metadata and the NCBI URLs to each sample. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.

本项目旨在描述哈伯德布鲁克实验林（Hubbard Brook Experimental Forest）内5条研究溪流中的溪螈（Gryinophilus porphyriticus）的精细尺度种群遗传分化。本数据集结合高强度标记重捕数据，用以评估个体遗传多样性对适合度的直接影响，其中涵盖个体多位点杂合度对不同发育阶段存活率的作用。本数据集附带提交至美国国家生物技术信息中心（National Center for Biotechnology Information, NCBI）序列读取档案（Sequence Read Archive, SRA）的基因组测序读数清单。相关样本已在NCBI以BioProject编号1090913发布（https://www.ncbi.nlm.nih.gov/bioproject/1090913）。本文档中的表格包含样本元数据以及各样本对应的NCBI链接。本数据集采集自哈伯德布鲁克生态系统研究（Hubbard Brook Ecosystem Study, HBES）项目。HBES是在哈伯德布鲁克实验林开展的协作研究项目，该实验林由美国农业部林务局北方研究站（USDA Forest Service, Northern Research Station）运营维护。