Pseudomonas sp. URMO17WK12:I9

This is a reference bacterial genome from a study to characterize how plant host genes affect the microbiome community assemblage and how the microbiome influences plant phenotypes, such as drought or salt tolerance, nutrient use, productivity, pathogen resistance, and yield. Plant-associated metagenomes are being characterized by 16S ribotyping, metagenome and reference genome sequencing and metatranscriptome sequencing. Experimental systems used to characterize the interplay between host and associated communities in different plant types have been chosen to be relevant to energy and environmental concerns, for example, Arabidopsis as a model, corn, and a key biofuel crop (Miscanthus).

本数据集为某研究的参考细菌基因组（reference bacterial genome），该研究旨在解析植物宿主基因如何调控微生物组群落组装，以及微生物组如何影响植物表型，具体包括耐旱性、耐盐性、养分利用效率、生产力、病原菌抗性与作物产量。当前研究通过16S核糖体分型（16S ribotyping）、宏基因组（metagenome）与参考基因组测序、宏转录组（metatranscriptome）测序等技术，对植物关联宏基因组开展解析。为解析不同植物类型中宿主与关联群落的互作关系，研究选取了与能源及环境关切相关的实验体系，包括模式植物拟南芥（Arabidopsis）、玉米以及关键生物燃料作物芒草（Miscanthus）。