Additional file 7 of Microbial colonization and resistome dynamics in food processing environments of a newly opened pork cutting industry during 1.5 years of activity

Additional file 7. LGTs-Integrons. Blastn results for those LGT and integron regions associated with ARGs. The first column indicates the contig name, while columns B to E indicate the origin of the sample where the contig was occurring (surface type, processing room, day of visit, sampling time). Column F indicates the best match obtained by blastn versus the ResFinder database, while columns G to P indicate the parameters of the alignment obtained by blastn. Columns Q to T show the hierarchical classification of the gene obtained as the best match hit, according to Supp. File 4. Column U indicates the genomic location obtained for the contig by the Plasflow pipeline. Columns V and W show the CladeA (host) and CladeB (source) for the lateral gene transfer (LGT) events detected. Rows highlighted in orange or yellow indicate contigs that contain more than one ARG within their integron region.

补充文件7：水平基因转移-整合子（LGTs-Integrons）。本文件收录了与抗生素抗性基因（Antibiotic Resistance Genes, ARGs）相关的水平基因转移及整合子区域的BLASTn比对结果。第一列为重叠群（contig）名称；B至E列记录该重叠群所在样本的来源信息，具体包括表面类型、处理间、采样日期及采样时间。F列为通过BLASTn比对ResFinder数据库所获得的最佳匹配序列；G至P列为本次BLASTn比对得到的各项比对参数。Q至T列为依据补充文件4得到的最佳匹配基因的层级分类信息。U列为通过Plasflow分析流程得到的该重叠群的基因组定位信息。V列与W列分别为检测到的水平基因转移事件的进化枝A（CladeA）与进化枝B（CladeB）信息。以橙色或黄色高亮的行代表其整合子区域内包含多个抗生素抗性基因的重叠群。