Whole genome analysis reveals the host adaptation signatures among the population of human and avian clinical isolates of Salmonella enterica Enteritidis

Collection of 86 clinical strains of S. Enteritidis, isolated from two genetically and physiologically different hosts, a mammal (human) and a bird (chicken). The human isolates represent a sub collection of gastrointestinal (n=23) and invasive (n=23) strains collected over fourteen years (from 2003 to 2016) from the state of Minnesota, while avian (40) isolates were implicated in primary infections of the avian hosts and they were collected from thirteen states of the US during 2014-2016.

本数据集包含86株肠炎沙门氏菌（S. Enteritidis）临床分离株，均分离自两种遗传与生理特征存在显著差异的宿主：哺乳动物（人类）与禽类（鸡）。其中人类来源分离株包含两个亚组：23株胃肠道感染菌株（n=23）与23株侵袭性感染菌株（n=23），于2003至2016年的14年间从美国明尼苏达州采集获得；40株禽类来源分离株均与禽类宿主的原发性感染相关，于2014至2016年间从美国13个州采集得到。