MOESM2 of Assigning breed origin to alleles in crossbred animals

Additional file 2. Figure S1: Percentages of correct allelic assignments with a relaxation factor equal to 20 % when breeds are distantly related. Minimum (grey) and maximum (black) percentages of correct allelic assignments, for the chromosome 2 and averaged across A(BC) animals of distantly related breeds, as a function of the number of offset and non-offset phasing analyses selected based on a forward selection. Reported results are averages and SD across all replicates. Figure S2: Percentages of correct allelic assignments with a relaxation factor equal to 0 % when breeds are distantly related. Minimum (grey) and maximum (black) percentages of correct allelic assignments, for the chromosome 2 and averaged across A(BC) animals of distantly related breeds, as a function of the number of offset and non-offset phasing analyses selected based on a forward selection. Reported results are averages and SD across all replicates. Figure S3: Percentages of correct allelic assignments with a relaxation factor equal to 20 % when breeds are unrelated. Minimum (grey) and maximum (black) percentages of correct allelic assignments, for the chromosome 2 and averaged across A(BC) animals of unrelated breeds, as a function of the number of offset and non-offset phasing analyses selected based on a forward selection. Reported results are averages and SD across all replicates. Figure S4: Breed origin of the two alleles for each SNP of the chromosome SSC2 in 20 EF animals using BOA and the additional rules. Alleles from breeds E and F are in green and blue, respectively. Grey regions are unassigned alleles. Relaxation factor was equal to 0 %. Figure S5: Breed origin of the two alleles for each SNP of the chromosome SSC2 in 20 D(EF) animals using BOA and the additional rules. Alleles from breeds D, E, and F are in brown, green, and blue, respectively. Grey regions are unassigned alleles. Relaxation factor was equal to 0 %.

补充文件2。
图S1：当品种间为远缘亲缘关系时，松弛因子设为20%条件下的正确等位基因分配（allelic assignments）百分比。本图针对2号染色体，以正向选择法筛选得到的偏移与非偏移相位分型分析数量为横轴，对远缘品种的A(BC)群体动物的结果取平均值，展示正确等位基因分配百分比的最小值（灰色曲线）与最大值（黑色曲线）。报告结果为所有重复实验的平均值与标准差（SD）。
图S2：当品种间为远缘亲缘关系时，松弛因子设为0%条件下的正确等位基因分配百分比。本图针对2号染色体，以正向选择法筛选得到的偏移与非偏移相位分型分析数量为横轴，对远缘品种的A(BC)群体动物的结果取平均值，展示正确等位基因分配百分比的最小值（灰色曲线）与最大值（黑色曲线）。报告结果为所有重复实验的平均值与标准差。
图S3：当品种间为无亲缘关系时，松弛因子设为20%条件下的正确等位基因分配百分比。本图针对2号染色体，以正向选择法筛选得到的偏移与非偏移相位分型分析数量为横轴，对无亲缘关系品种的A(BC)群体动物的结果取平均值，展示正确等位基因分配百分比的最小值（灰色曲线）与最大值（黑色曲线）。报告结果为所有重复实验的平均值与标准差。
图S4：采用BOA及附加规则，对20头EF群体动物的SSC2染色体上每个单核苷酸多态性（Single Nucleotide Polymorphism, SNP）位点的两个等位基因进行品种溯源。来自品种E和F的等位基因分别以绿色、蓝色标注，灰色区域代表未分配的等位基因。本次实验松弛因子设为0%。
图S5：采用BOA及附加规则，对20头D(EF)群体动物的SSC2染色体上每个单核苷酸多态性位点的两个等位基因进行品种溯源。来自品种D、E和F的等位基因分别以棕色、绿色、蓝色标注，灰色区域代表未分配的等位基因。本次实验松弛因子设为0%。