FAIRsharing record for: Ocean Gene Atlas

This FAIRsharing record describes: Ocean Gene Atlas(OGA) is a webservice to explore the biogeography of marine genes based on sequence similarity with environmental genomics datasets. OGA is currently implemented with the Tara Ocean Microbiome-Reference Gene Catalog database and the Marine Atlas of Tara Ocean Unigenes. Gene abundance estimates are computed for DNA metagenomes from the smallest Tara Oceans size fractions (from 0 to 3 µm, OM-RGC), and for RNA metatranscriptomes from Tara Oceans larger size fractions (0.8 to 2000µm, MATOU). OGA also includes curated Tara Oceans Eukaryotic Metagenome and Single-Cell Assembled Genomes (MAGs and SAGs), metagenomics-based transcriptomes (MGTs) and metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean (Arctic MAG+G).

本FAIRsharing记录描述：海洋基因图谱（Ocean Gene Atlas，OGA）是一项基于环境基因组数据集序列相似性，探索海洋基因生物地理学特征的网络服务。OGA当前整合了塔拉海洋微生物组参考基因目录数据库与塔拉海洋非冗余基因海洋图谱。基因丰度估算针对塔拉海洋最小粒径分级（0至3微米，OM-RGC）的DNA宏基因组，以及较大粒径分级（0.8至2000微米，MATOU）的RNA宏转录组进行计算。OGA还包含经过整理的塔拉海洋真核生物宏基因组与单细胞组装基因组（MAGs和SAGs）、基于宏基因组学的转录组（MGTs），以及北极极地海洋的宏基因组组装细菌与古菌基因组（Arctic MAG+G）。