List of the statistically overrepresented Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways obtained for each independent component (IC) after removing first line of variance.
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https://figshare.com/articles/dataset/List_of_the_statistically_overrepresented_Kyoto_Encyclopedia_of_Genes_and_Genomes_KEGG_pathways_obtained_for_each_independent_component_IC_after_removing_first_line_of_variance_/5498902
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KEGG pathway ID and description is enclosed in the table. Pathway’s main category and subcategory are shown. Gene:Bg Ratio indicates the number of genes annotated to a pathway within the specific list of differential genes among the 509 major contributors that are included in the database (i.e. 201 for IC1) versus the number of genes annotated to a pathway within the background. Background considers all differential genes included in KEGG database which corresponds to 1905 elements among 5084 differential genes. Pathways are sorted based on their adj p-val (FDR correction) coded as *** < 0.001, ** < 0.01 and * < 0.05. Up-reg indicates the percentage of differential genes annotated to the specific pathway being up-regulated.
表格中收录了KEGG通路(KEGG pathway)的ID与描述信息,并展示了对应通路的主类别与子类别。Gene:Bg Ratio(基因/背景比值)指:数据库收录的509个核心贡献基因集合内的差异基因列表中,注释至某通路的基因数(以IC1组为例,该数值为201),与背景基因集中注释至该通路的基因数的比值。此处的背景基因集为所有纳入KEGG数据库的差异基因,即5084个差异基因中的1905个。通路依据经错误发现率(FDR)校正后的P值进行排序,星号标注规则为:***对应P<0.001,**对应P<0.01,*对应P<0.05。Up-reg(上调占比)指注释至该特定通路的差异基因中,上调基因所占的百分比。
创建时间:
2017-10-14



