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Multi-year genotype characterization of eastern spruce budworm outbreaking populations from Quebec and adjacent regions

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NIAID Data Ecosystem2026-05-02 收录
下载链接:
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1120418
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资源简介:
Genotypic dataset for 1998 geo-referenced SBW individuals collected between the years of 2012 and 2017, during the rising and peak phases of an outbreak that began approximately in 2006. Our sampling covers an unprecedented scope in extent and number of individuals collected between 2012 and 2017 from Quebec, and in 2015 from New Brunswick (Canada) and from Maine (USA), from multiple SBW life stages, including early and late instar larvae (L2 - L6), pupae, and adult moths. Sampling effort covered areas close to the epicenter of the outbreak (Quebec/Canada) and adjacent areas affected by the outbreak progress.Fastq files for each individual have been demultiplexed and are sorted by year. Each tarball corresponds to one year of sampling.sbw_raw_2012.tar.gz ---- 573 individualssbw_raw_2013.tar.gz ---- 410 individualssbw_raw_2014.tar.gz ---- 555 individualssbw_raw_2015.tar.gz ---- 155 individualssbw_raw_2017.tar.gz ---- 145 individualssbw_raw_ADJ2015.tar.gz ---- 160 individuals

本数据集为1998年地理定位的云杉芽虫(Spruce Budworm, SBW)个体的基因型数据集,采集时段为2012至2017年,对应2006年左右暴发的云杉芽虫疫情的上升期与高峰期。 本次采样在采样范围与采集个体数量上均达到空前规模:2012至2017年间于加拿大魁北克省开展采样,2015年额外于加拿大新不伦瑞克省与美国缅因州采集样本;采样涵盖云杉芽虫的多个生活史阶段,包括早龄及晚龄幼虫(L2至L6期)、蛹与成虫。 采样区域覆盖此次疫情震中附近区域(加拿大魁北克省)及受疫情扩散影响的邻近区域。所有个体的Fastq文件均已完成解复用,并按采集年份分类归档。每个压缩包对应单一年度的采样数据,详情如下: sbw_raw_2012.tar.gz —— 包含573个个体 sbw_raw_2013.tar.gz —— 包含410个个体 sbw_raw_2014.tar.gz —— 包含555个个体 sbw_raw_2015.tar.gz —— 包含155个个体 sbw_raw_2017.tar.gz —— 包含145个个体 sbw_raw_ADJ2015.tar.gz —— 包含160个个体
创建时间:
2024-06-05
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