Nuclear genome annotation for Carya glabra (pignut hickory; Juglandaceae)

File name Description Carya_glabra_hapA-genome-v1.0.a1.ncbi.fa.gz Carya glabra haplotype A assembly Carya_glabra_hapB-genome-v1.0.a1.ncbi.fa.gz Carya glabra haplotype B assembly Carya_glabra_hapC-genome-v1.0.a1.ncbi.fa.gz Carya glabra haplotype C assembly Carya_glabra_hapD-genome-v1.0.a1.ncbi.fa.gz Carya glabra haplotype D assembly Carya.glabra_hapA_braker_final2_sup50_renamed.gff GFF file of annotated genes in Carya glabra haplotype A Carya.glabra_hapA_braker_final2_sup50_renamed_longIso.gff GFF file of annotated genes (longest isoforms only) in Carya glabra haplotype A Carya.glabra_hapA_braker_final2_renamed_cds.fa.gz CDS sequences of annotated genes in Carya glabra haplotype A Carya.glabra_hapA_braker_final2_renamed_cds_longIso.fa.gz CDS sequences of annotated genes (longest isoforms only) in Carya glabra haplotype A Carya.glabra_hapA_braker_final2_renamed_protein.fa.gz Protein sequences of annotated genes in Carya glabra haplotype A Carya.glabra_hapA_braker_final2_renamed_protein_longIso.fa.gz Protein sequences of annotated genes (longest isoforms only) in Carya glabra haplotype A Carya.glabra_hapB_braker_final2_sup50_renamed.gff GFF file of annotated genes in Carya glabra haplotype B Carya.glabra_hapB_braker_final2_sup50_renamed_longIso.gff GFF file of annotated genes (longest isoforms only) in Carya glabra haplotype B Carya.glabra_hapB_braker_final2_renamed_cds.fa.gz CDS sequences of annotated genes in Carya glabra haplotype B Carya.glabra_hapB_braker_final2_renamed_cds_longIso.fa.gz CDS sequences of annotated genes (longest isoforms only) in Carya glabra haplotype B Carya.glabra_hapB_braker_final2_renamed_protein.fa.gz Protein sequences of annotated genes in Carya glabra haplotype B Carya.glabra_hapB_braker_final2_renamed_protein_longIso.fa.gz Protein sequences of annotated genes (longest isoforms only) in Carya glabra haplotype B Carya.glabra_hapC_braker_final2_sup50_renamed.gff GFF file of annotated genes in Carya glabra haplotype C Carya.glabra_hapC_braker_final2_sup50_renamed_longIso.gff GFF file of annotated genes (longest isoforms only) in Carya glabra haplotype C Carya.glabra_hapC_braker_final2_renamed_cds.fa.gz CDS sequences of annotated genes in Carya glabra haplotype C Carya.glabra_hapC_braker_final2_renamed_cds_longIso.fa.gz CDS sequences of annotated genes (longest isoforms only) in Carya glabra haplotype C Carya.glabra_hapC_braker_final2_renamed_protein.fa.gz Protein sequences of annotated genes in Carya glabra haplotype C Carya.glabra_hapC_braker_final2_renamed_protein_longIso.fa.gz Protein sequences of annotated genes (longest isoforms only) in Carya glabra haplotype C Carya.glabra_hapD_braker_final2_sup50_renamed.gff GFF file of annotated genes in Carya glabra haplotype D Carya.glabra_hapD_braker_final2_sup50_renamed_longIso.gff GFF file of annotated genes (longest isoforms only) in Carya glabra haplotype D Carya.glabra_hapD_braker_final2_renamed_cds.fa.gz CDS sequences of annotated genes in Carya glabra haplotype D Carya.glabra_hapD_braker_final2_renamed_cds_longIso.fa.gz CDS sequences of annotated genes (longest isoforms only) in Carya glabra haplotype D Carya.glabra_hapD_braker_final2_renamed_protein.fa.gz Protein sequences of annotated genes in Carya glabra haplotype D Carya.glabra_hapD_braker_final2_renamed_protein_longIso.fa.gz Protein sequences of annotated genes (longest isoforms only) in Carya glabra haplotype D Carya_glabra_hapA-genome-v1.0.a1.fa.mod.EDTA.TEanno.gff3 Transposable element (TE) annotation in Carya glabra haplotype A (EDTA) Carya_glabra_hapB-genome-v1.0.a1.fa.mod.EDTA.TEanno.gff3 Transposable element (TE) annotation in Carya glabra haplotype B (EDTA) Carya_glabra_hapC-genome-v1.0.a1.fa.mod.EDTA.TEanno.gff3 Transposable element (TE) annotation in Carya glabra haplotype C (EDTA) Carya_glabra_hapD-genome-v1.0.a1.fa.mod.EDTA.TEanno.gff3 Transposable element (TE) annotation in Carya glabra haplotype D (EDTA) Carya.glabra_hapA_transcripts_gf_exp7998.txt Carya glabra haplotype A transcripts with their associated gene family (TRAPID 2.0) Carya.glabra_hapA_transcripts_go_exp7998.txt Carya glabra haplotype A transcripts with associated GO terms (TRAPID 2.0) Carya.glabra_hapA_transcripts_interpro_exp7998.txt Carya glabra haplotype A transcripts with associated protein domains (TRAPID 2.0) Carya.glabra_hapB_transcripts_gf_exp8000.txt Carya glabra haplotype B transcripts with their associated gene family (TRAPID 2.0) Carya.glabra_hapB_transcripts_go_exp8000.txt Carya glabra haplotype B transcripts with associated GO terms (TRAPID 2.0) Carya.glabra_hapB_transcripts_interpro_exp8000.txt Carya glabra haplotype B transcripts with associated protein domains (TRAPID 2.0) Carya.glabra_hapC_transcripts_gf_exp8001.txt Carya glabra haplotype C transcripts with their associated gene family (TRAPID 2.0) Carya.glabra_hapC_transcripts_go_exp8001.txt Carya glabra haplotype C transcripts with associated GO terms (TRAPID 2.0) Carya.glabra_hapC_transcripts_interpro_exp8001.txt Carya glabra haplotype C transcripts with associated protein domains (TRAPID 2.0) Carya.glabra_hapD_transcripts_gf_exp8002.txt Carya glabra haplotype D transcripts with their associated gene family (TRAPID 2.0) Carya.glabra_hapD_transcripts_go_exp8002.txt Carya glabra haplotype D transcripts with associated GO terms (TRAPID 2.0) Carya.glabra_hapD_transcripts_interpro_exp8002.txt Carya glabra haplotype D transcripts with associated protein domains (TRAPID 2.0) Carya.glabra_hapA_R-genes.xlsx Putative plant disease resistance genes (R genes) in Carya glabra haplotype A Carya.glabra_hapB_R-genes.xlsx Putative plant disease resistance genes (R genes) in Carya glabra haplotype B Carya.glabra_hapC_R-genes.xlsx Putative plant disease resistance genes (R genes) in Carya glabra haplotype C Carya.glabra_hapD_R-genes.xlsx Putative plant disease resistance genes (R genes) in Carya glabra haplotype D Carya.glabra_chloroplast_genome_updated_20251113.fasta Carya glabra chloroplast genome Carya.glabra_mitogenome_MIT_1_Oatk.fasta Carya glabra mitochondrial genome mtChr1 Carya.glabra_mitogenome_MIT_2_Oatk_updated.fasta Carya glabra mitochondrial genome mtChr2