Datasets and experiment data of long read alignment using partitioned reference indexes

Directories inside this zip file are,
--synthetic_readsThis directory contains the datasets, scripts and the generated experimental data of the mapping evaluation based on synthetic reads.
--chromothriptic_read This directory contains the datasets, scripts and the generated experimental data of the mapping evaluation based on the ultra-long Nanopore chromothriptic read.
--nanopore_NA12878_reads This directory contains the scripts and the generated experimental data of the mapping evaluation based on the Nanopore NA12878 reads. The input read set is not included as it is publicly available from http://s3.amazonaws.com/nanopore-human-wgs/rel3-nanopore-wgs-84868110-FAF01132.fastq.gz
--indexing_memory_usage Contains the scripts (and their outputs) used to evaluate the peak memory usage of minimap2 with and without chromosome size balancing of the index.
--runtimeContains the scripts (and their outputs) used to measure the runtime of a single-idx vs n-part-idx-merged

See the README.txt in the zip file for more information.

该压缩包内包含以下目录：
-- synthetic_reads：该目录存放基于合成测序读段（synthetic reads）的序列比对评估所需的数据集、脚本及生成的实验数据。
-- chromothriptic_read：该目录存放基于超长纳米孔（Nanopore）测序染色体重排碎裂读段的序列比对评估所需的数据集、脚本及生成的实验数据。
-- nanopore_NA12878_reads：该目录存放基于纳米孔（Nanopore）NA12878测序读段的序列比对评估所需的脚本及生成的实验数据。由于该输入读段集可从公开地址http://s3.amazonaws.com/nanopore-human-wgs/rel3-nanopore-wgs-84868110-FAF01132.fastq.gz获取，故未将其纳入当前压缩包。
-- indexing_memory_usage：该目录包含用于评估启用与禁用染色体大小平衡的索引构建流程中，minimap2程序的峰值内存占用的脚本（及对应输出结果）。
-- runtime：该目录包含用于对比测试单索引（single-idx）与多分块索引合并（n-part-idx-merged）运行时长的脚本（及对应输出结果）。

如需了解更多细节，请参阅压缩包内的README.txt文件。