General features of the three genomes.

Data are based on the manual annotation of MED134, GenDB annotation in the case of PRO95, and 4H-3-7-5 GenBank file. Peptidases, glycosyl hydrolases, adhesion proteins and transporter genes were recalculated as the number of hits to the corresponding PFAMs, and the genes in paralogous clusters were calculated as described [28]. Lipoproteins were identified using LipoP (http://www.ncbi.nlm.nih.gov/pubmed/12876315) and signal peptides with SignalP (http://www.ncbi.nlm.nih.gov/pubmed/21959131).

本数据集的数据依托MED134的人工注释、PRO95场景下的GenDB注释，以及4H-3-7-5的GenBank文件生成。肽酶、糖基水解酶、黏附蛋白及转运蛋白基因的计数以其对应PFAM家族（Protein Family, PFAM）的匹配命中数重新计算，旁系同源基因簇内的基因则按照文献[28]所述方法进行统计。脂蛋白的鉴定采用LipoP工具（http://www.ncbi.nlm.nih.gov/pubmed/12876315），信号肽的预测则通过SignalP工具（http://www.ncbi.nlm.nih.gov/pubmed/21959131）完成。