Additional file 3: of Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array

Individual matrices with numbers of different and identical SNPs for entries with the same name. These values were extracted directly from Additional file 5. Values above the diagonal represent the count of homozygous differences between pairs of samples. Values below the diagonal represent the number of identical SNPs genotyped between pairs. Heterozygous SNPs within samples were not counted in the number of differences between samples. SNP numbers were determined using all SNPs on the CottonSNP63K array. Five samples are included here that were identified as outliers and not used in the diversity analysis. (XLSX 17Â kb)

针对同名条目，包含不同与相同单核苷酸多态性（Single Nucleotide Polymorphism, SNP）计数的独立矩阵。此类数值直接提取自补充文件5。矩阵对角线以上的数值代表样本对之间的纯合差异位点数目，对角线以下的数值则代表样本对之间经基因分型验证的相同SNP位点数目。样本内的杂合SNP不计入样本间的差异位点总数。此处的SNP位点数量基于棉花SNP63K芯片（CottonSNP63K array）上的全部SNP位点确定。本数据集包含5个被判定为异常值的样本，此类样本未被纳入多样性分析流程。（XLSX 17 KB）