Atomic resolution HOLZ-STEM imaging of atom position modulation in oxide heterostructures

<strong>Dataset and python processing scripts for the journal article "Atomic resolution HOLZ-STEM imaging of atom position modulation in oxide heterostructures"</strong> DOI for the journal article: https://doi.org/10.1016/j.ultramic.2021.113296 There are two types of data in this deposit, experimental and simulated: The simulated is contained in the sim_data_deposit.zip file The experimental is in the "root" folder. This is in the form of the raw data files themselves, the python scripts and the intermediate files. <strong>The experimental data</strong> The raw, original, dataset is 011_big_film_512x512.emd. Which is a hdf5-file following the EMD (NCEM) standard. In addition, a reconverted version of this file, with a more optimized internal structure, which can be loaded directly in HyperSpy and pyXem is included (011_big_film_512x512_updated.hspy). The python processing files are intended to be run from the first, a000, to the last b010. In the order a000, a001, a002, .... b000, b001, ... The python library and version requirements are found in requirements.txt. The most important ones being HyperSpy and pixStem. Note that pixStem has been merged with the pyXem project, but the pixStem code will remain available for the foreseeable future. The <strong>011_big_film_512x512_updated.hspy</strong> is included for convenience, to make it easier to explore the data with more recent versions of HyperSpy and pyXem. In addition, it has a more optimized internal structure (via more optimized chunking). To view it, install HyperSpy and load the data: <pre><code class="language-python">import hyperspy.api as hs s = hs.load("011_big_film_512x512_updated.hspy") s.plot()</code></pre>